Wall clock time and date at job start Mon Mar 30 2020 02:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 C 1.50696 * 109.47368 * 119.99649 * 2 1 3 5 5 C 1.39281 * 126.40769 * 300.12706 * 4 2 1 6 6 C 1.41597 * 126.55653 * 0.03426 * 5 4 2 7 7 H 1.07997 * 120.00061 * 0.25651 * 6 5 4 8 8 C 1.39700 * 119.99976 * 180.25362 * 6 5 4 9 9 N 1.31028 * 119.99759 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99817 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46986 * 90.00212 * 10 8 6 12 12 H 1.48505 * 109.47032 * 209.99945 * 10 8 6 13 13 H 1.48493 * 109.47327 * 330.00432 * 10 8 6 14 14 C 1.41885 * 106.88617 * 180.27192 * 5 4 2 15 15 N 1.30318 * 108.04623 * 359.76347 * 14 5 4 16 16 N 1.34499 * 126.40656 * 119.99768 * 4 2 1 17 17 C 1.46500 * 125.67683 * 359.97438 * 16 4 2 18 18 C 1.52997 * 109.47473 * 239.71575 * 17 16 4 19 19 C 1.53006 * 109.47249 * 119.71277 * 17 16 4 20 20 H 1.09004 * 109.46846 * 299.99945 * 1 2 3 21 21 H 1.08997 * 109.47277 * 60.00213 * 1 2 3 22 22 H 1.08997 * 109.46721 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47491 * 240.00340 * 2 1 3 24 24 H 1.09000 * 109.47262 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46869 * 300.00036 * 3 2 1 26 26 H 1.09002 * 109.47319 * 59.99506 * 3 2 1 27 27 H 0.97002 * 119.99347 * 179.97438 * 9 8 6 28 28 H 1.07997 * 125.97919 * 179.78746 * 14 5 4 29 29 H 1.08998 * 109.46845 * 359.72124 * 17 16 4 30 30 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 31 31 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 32 32 H 1.09004 * 109.47261 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47002 * 60.00085 * 19 17 16 34 34 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 35 35 H 1.09000 * 109.47050 * 300.00351 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7776 -0.3541 2.5526 6 6 0.9981 0.7419 2.9955 7 1 0.5286 1.3965 2.2760 8 6 0.8362 0.9766 4.3631 9 7 1.4060 0.1827 5.2359 10 14 -0.1928 2.4220 4.9473 11 1 -1.6052 1.9919 5.1068 12 1 0.3278 2.9051 6.2516 13 1 -0.1190 3.5181 3.9482 14 6 2.4530 -1.2961 3.3708 15 7 3.0570 -2.1481 2.5913 16 7 2.8088 -1.8083 1.2573 17 6 3.3151 -2.5255 0.0845 18 6 2.8108 -3.9697 0.1128 19 6 4.8451 -2.5191 0.1041 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9565 0.8899 27 1 1.2939 0.3459 6.1855 28 1 2.4642 -1.3058 4.4507 29 1 2.9614 -2.0348 -0.8221 30 1 1.7209 -3.9743 0.0989 31 1 3.1646 -4.4604 1.0196 32 1 3.1872 -4.5032 -0.7600 33 1 5.1989 -3.0098 1.0108 34 1 5.2218 -3.0524 -0.7687 35 1 5.2044 -1.4902 0.0839 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261209714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:35 Heat of formation + Delta-G solvation = 33.081858 kcal Electronic energy + Delta-G solvation = -15806.795052 eV Core-core repulsion = 13419.002001 eV Total energy + Delta-G solvation = -2387.793051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.34144 -36.51850 -36.04308 -34.81152 -30.59775 -30.06141 -28.13209 -27.79585 -26.58759 -23.30227 -22.94659 -20.83726 -19.47274 -18.58581 -17.13491 -16.51261 -15.51128 -15.45622 -15.00447 -14.88123 -14.47351 -13.89692 -13.48467 -13.41262 -13.26525 -13.07219 -12.83405 -12.81538 -12.75541 -12.51625 -12.28772 -12.18932 -11.88774 -11.87453 -11.70060 -11.06003 -11.04042 -10.52271 -9.44721 -8.92912 -8.25066 -5.84955 1.34058 1.45753 1.57063 1.65336 2.28199 2.38254 2.50487 3.67426 3.79282 4.06432 4.12695 4.17860 4.30921 4.53295 4.59676 4.71336 4.74611 4.86368 4.92520 4.95941 5.02054 5.10214 5.17639 5.22300 5.29076 5.29323 5.34440 5.59564 5.68047 5.84359 5.95407 6.25456 6.73060 6.90725 7.26932 7.29977 7.69404 8.75882 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.009919 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.227981 B = 2822.181739 C = 3342.718064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.003 3.997 3 C -0.135 4.135 4 C -0.065 4.065 5 C -0.057 4.057 6 C -0.447 4.447 7 H 0.080 0.920 8 C 0.013 3.987 9 N -0.877 5.877 10 Si 0.975 3.025 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.259 1.259 14 C -0.012 4.012 15 N -0.355 5.355 16 N -0.374 5.374 17 C 0.148 3.852 18 C -0.147 4.147 19 C -0.148 4.148 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.272 0.728 28 H 0.180 0.820 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -0.965 -11.384 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 C -0.193 4.193 4 C -0.190 4.190 5 C -0.066 4.066 6 C -0.482 4.482 7 H 0.098 0.902 8 C -0.193 4.193 9 N -0.510 5.510 10 Si 0.799 3.201 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.183 1.183 14 C -0.196 4.196 15 N -0.179 5.179 16 N -0.162 5.162 17 C 0.046 3.954 18 C -0.205 4.205 19 C -0.205 4.205 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.196 0.804 29 H 0.126 0.874 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.475 -2.070 -11.291 11.574 hybrid contribution -0.812 1.124 1.136 1.792 sum 0.663 -0.946 -10.155 10.221 Atomic orbital electron populations 1.21770 0.94409 1.00952 1.02191 1.19326 0.95727 0.95051 0.91664 1.21764 0.99848 0.95514 1.02159 1.21430 1.06009 0.95056 0.96482 1.18252 1.00972 0.97821 0.89603 1.19050 1.27557 1.09840 0.91763 0.90224 1.26471 0.96525 0.99400 0.96885 1.69616 1.41066 1.37755 1.02605 0.85280 0.78359 0.78643 0.77796 1.19752 1.20603 1.18308 1.24828 0.99349 0.94994 1.00424 1.76420 1.27012 1.26340 0.88095 1.48028 1.41323 1.22713 1.04144 1.21345 0.95347 0.93438 0.85221 1.22038 1.00690 0.94706 1.03095 1.22042 0.93558 1.01860 1.03088 0.93118 0.90427 0.94293 0.90596 0.94302 0.90434 0.93181 0.91777 0.80382 0.87428 0.93707 0.93637 0.87885 0.93640 0.87892 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.04 71.98 0.65 -4.00 16 2 C 0.00 0.09 3.03 -11.54 -0.04 0.06 16 3 C -0.14 -4.65 9.04 71.98 0.65 -4.00 16 4 C -0.06 -3.03 5.75 42.40 0.24 -2.78 16 5 C -0.06 -3.11 5.79 -21.30 -0.12 -3.24 16 6 C -0.45 -24.26 7.69 23.45 0.18 -24.08 16 7 H 0.08 4.07 4.71 -2.91 -0.01 4.05 16 8 C 0.01 0.68 5.49 85.17 0.47 1.15 16 9 N -0.88 -49.01 10.33 21.79 0.22 -48.78 16 10 Si 0.98 41.24 29.56 68.60 2.03 43.26 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 14 C -0.01 -0.68 10.91 85.82 0.94 0.25 16 15 N -0.35 -18.61 12.30 -55.94 -0.69 -19.30 16 16 N -0.37 -16.78 3.25 -311.43 -1.01 -17.80 16 17 C 0.15 4.83 3.63 44.99 0.16 4.99 16 18 C -0.15 -4.25 9.44 71.98 0.68 -3.57 16 19 C -0.15 -4.26 9.44 71.98 0.68 -3.58 16 20 H 0.05 2.00 5.73 -2.38 -0.01 1.99 16 21 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 2.34 6.32 -2.39 -0.02 2.33 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.99 5.77 -2.39 -0.01 1.98 16 27 H 0.27 14.14 8.30 -92.71 -0.77 13.37 16 28 H 0.18 10.77 5.77 -2.91 -0.02 10.76 16 29 H 0.11 2.99 6.25 -2.39 -0.01 2.98 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.79 280.30 6.12 -58.67 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 1.07 Total: 22.74 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 4.49 Total: -38.80 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.48 Total: -85.88 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -64.79 6.12 -58.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.752 kcal (2) G-P(sol) polarization free energy of solvation -64.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds