Wall clock time and date at job start Mon Mar 30 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47106 * 2 1 4 4 C 1.35039 * 126.39935 * 270.12149 * 3 2 1 5 5 N 1.30499 * 108.70055 * 180.27084 * 4 3 2 6 6 C 1.34126 * 109.25434 * 359.76899 * 5 4 3 7 7 C 1.50706 * 125.99123 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47126 * 25.00106 * 7 6 5 9 9 C 1.50697 * 109.47156 * 144.99988 * 7 6 5 10 10 H 1.07999 * 119.99790 * 84.56610 * 9 7 6 11 11 C 1.37881 * 119.99959 * 264.56528 * 9 7 6 12 12 N 1.31509 * 120.00126 * 5.65049 * 11 9 7 13 13 Si 1.86802 * 119.99751 * 185.64734 * 11 9 7 14 14 H 1.48502 * 109.47388 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46718 * 120.00181 * 13 11 9 16 16 H 1.48498 * 109.47237 * 240.00078 * 13 11 9 17 17 C 1.52999 * 109.47091 * 265.00179 * 7 6 5 18 18 C 1.52999 * 109.47328 * 61.61373 * 17 7 6 19 19 C 1.53001 * 109.46937 * 181.61215 * 17 7 6 20 20 C 1.34671 * 108.02039 * 359.97438 * 6 5 4 21 21 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 22 22 H 1.09011 * 109.46716 * 299.99572 * 1 2 3 23 23 H 1.08999 * 109.47452 * 59.99521 * 1 2 3 24 24 H 1.08999 * 109.46353 * 240.00204 * 2 1 3 25 25 H 1.09000 * 109.47262 * 120.00992 * 2 1 3 26 26 H 1.08004 * 125.64965 * 0.02562 * 4 3 2 27 27 H 0.96997 * 120.00273 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47299 * 301.60953 * 17 7 6 29 29 H 1.09000 * 109.47274 * 59.99564 * 18 17 7 30 30 H 1.08999 * 109.47436 * 180.02562 * 18 17 7 31 31 H 1.09003 * 109.47013 * 300.00160 * 18 17 7 32 32 H 1.08994 * 109.47329 * 57.14986 * 19 17 7 33 33 H 1.09004 * 109.47047 * 177.15626 * 19 17 7 34 34 H 1.09004 * 109.47188 * 297.15191 * 19 17 7 35 35 H 1.08004 * 126.58943 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2833 2.1375 -1.0869 5 7 2.7040 3.3074 -0.6902 6 6 2.7177 3.3412 0.6505 7 6 3.1393 4.5105 1.5027 8 1 3.0097 5.4352 0.9405 9 6 2.2912 4.5564 2.7476 10 1 2.5593 3.9585 3.6060 11 6 1.1729 5.3619 2.7905 12 7 0.7831 6.0039 1.7110 13 14 0.2116 5.5412 4.3822 14 1 0.8524 4.7223 5.4424 15 1 0.2020 6.9671 4.7966 16 1 -1.1834 5.0771 4.1729 17 6 4.6102 4.3528 1.8932 18 6 5.4751 4.3466 0.6312 19 6 5.0271 5.5191 2.7915 20 6 2.2886 2.1470 1.1018 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 1.8934 -0.5140 0.8899 26 1 2.1699 1.8245 -2.1144 27 1 -0.0034 6.5709 1.7413 28 1 4.7448 3.4142 2.4307 29 1 5.3404 5.2852 0.0937 30 1 6.5229 4.2338 0.9093 31 1 5.1780 3.5157 -0.0088 32 1 4.3779 5.5541 3.6663 33 1 6.0601 5.3806 3.1107 34 1 4.9405 6.4537 2.2371 35 1 2.1831 1.8492 2.1346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:52 Heat of formation + Delta-G solvation = 40.561881 kcal Electronic energy + Delta-G solvation = -15589.962018 eV Core-core repulsion = 13202.493326 eV Total energy + Delta-G solvation = -2387.468692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03966 -35.89606 -34.06569 -32.18936 -29.55152 -29.06781 -26.59880 -25.75602 -23.58951 -22.77567 -20.07702 -19.69426 -18.33353 -16.42800 -16.15651 -14.68356 -14.37290 -14.27308 -13.55334 -13.27946 -13.01012 -12.76008 -12.49650 -12.15219 -11.89321 -11.62791 -11.29065 -11.20069 -11.12130 -10.86045 -10.60664 -10.19387 -9.97985 -9.74613 -9.17441 -9.01080 -8.66530 -8.48861 -8.36139 -7.09118 -5.90565 -3.94911 3.05623 3.32759 3.41483 3.44007 3.57263 4.38555 4.50684 4.86319 5.17816 5.29107 5.35557 5.47892 5.64743 5.77060 5.94341 6.11395 6.18549 6.19043 6.26692 6.54680 6.71917 6.83777 6.87650 6.95527 7.02619 7.28056 7.29383 7.43882 7.56489 7.89418 7.96067 8.17574 8.20726 8.53171 9.15816 9.29348 9.68511 11.17917 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.011796 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.874503 B = 2373.174474 C = 3302.764932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.472 5.472 4 C 0.146 3.854 5 N -0.493 5.493 6 C 0.069 3.931 7 C 0.114 3.886 8 H 0.067 0.933 9 C -0.504 4.504 10 H 0.054 0.946 11 C 0.068 3.932 12 N -0.880 5.880 13 Si 0.882 3.118 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.287 1.287 17 C -0.080 4.080 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.066 4.066 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.185 0.815 27 H 0.258 0.742 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.043 0.957 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -10.220 -2.205 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.015 4.015 3 N -0.159 5.159 4 C -0.135 4.135 5 N -0.212 5.212 6 C -0.059 4.059 7 C 0.094 3.906 8 H 0.085 0.915 9 C -0.543 4.543 10 H 0.073 0.927 11 C -0.135 4.135 12 N -0.517 5.517 13 Si 0.710 3.290 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.214 1.214 17 C -0.099 4.099 18 C -0.196 4.196 19 C -0.186 4.186 20 C -0.195 4.195 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.202 0.798 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.292 -9.580 -2.781 10.236 hybrid contribution -1.167 -0.692 1.256 1.849 sum 1.124 -10.273 -1.526 10.446 Atomic orbital electron populations 1.22161 0.94972 1.02069 1.03466 1.21589 0.95076 0.81587 1.03284 1.45399 1.51159 1.11797 1.07568 1.24640 1.06922 0.89072 0.92820 1.70239 1.19405 1.18016 1.13560 1.21739 0.99992 0.95501 0.88673 1.17383 0.88963 0.91595 0.92682 0.91524 1.20974 1.09302 1.25508 0.98497 0.92742 1.24975 0.97148 0.95775 0.95572 1.70012 1.24710 1.29997 1.27017 0.86706 0.79926 0.77924 0.84433 1.19723 1.21012 1.21388 1.21101 0.97073 0.97259 0.94436 1.21816 0.97438 1.01568 0.98733 1.21667 0.98116 0.98201 1.00588 1.22342 1.11754 0.93986 0.91376 0.91473 0.91687 0.92062 0.90002 0.89951 0.79800 0.93211 0.93513 0.93376 0.95131 0.93180 0.91618 0.95508 0.93765 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.11 1.34 6.87 -4.04 -0.03 1.32 16 3 N -0.47 -8.46 2.75 -118.58 -0.33 -8.79 16 4 C 0.15 2.80 12.56 -90.38 -1.14 1.67 16 5 N -0.49 -11.67 10.81 -10.87 -0.12 -11.79 16 6 C 0.07 1.69 4.98 -82.85 -0.41 1.28 16 7 C 0.11 2.91 1.91 -92.92 -0.18 2.73 16 8 H 0.07 1.97 7.38 -51.93 -0.38 1.59 16 9 C -0.50 -13.54 6.22 -34.44 -0.21 -13.75 16 10 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 11 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 12 N -0.88 -26.22 12.84 55.43 0.71 -25.50 16 13 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C -0.08 -1.74 2.49 -90.62 -0.23 -1.97 16 18 C -0.14 -2.78 8.97 37.16 0.33 -2.45 16 19 C -0.13 -2.64 8.98 37.16 0.33 -2.30 16 20 C -0.07 -1.42 10.76 -16.56 -0.18 -1.60 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.19 2.73 8.06 -52.48 -0.42 2.31 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.05 6.92 -51.93 -0.36 0.69 16 32 H 0.06 1.42 7.06 -51.93 -0.37 1.05 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.16 3.36 7.95 -52.48 -0.42 2.94 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -31.59 291.61 -7.50 -39.09 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.72 Total: 1.24 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.42 Total: -14.90 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.27 Total: -46.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.59 -7.50 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.652 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds