Wall clock time and date at job start Mon Mar 30 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47106 * 2 1 4 4 C 1.35039 * 126.39935 * 270.12149 * 3 2 1 5 5 N 1.30499 * 108.70055 * 180.27084 * 4 3 2 6 6 C 1.34126 * 109.25434 * 359.76899 * 5 4 3 7 7 C 1.50706 * 125.99123 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47126 * 25.00106 * 7 6 5 9 9 C 1.50697 * 109.47156 * 144.99988 * 7 6 5 10 10 H 1.07999 * 119.99790 * 84.56610 * 9 7 6 11 11 C 1.37881 * 119.99959 * 264.56528 * 9 7 6 12 12 N 1.31509 * 120.00126 * 5.65049 * 11 9 7 13 13 Si 1.86802 * 119.99751 * 185.64734 * 11 9 7 14 14 H 1.48502 * 109.47388 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46718 * 120.00181 * 13 11 9 16 16 H 1.48498 * 109.47237 * 240.00078 * 13 11 9 17 17 C 1.52999 * 109.47091 * 265.00179 * 7 6 5 18 18 C 1.52999 * 109.47328 * 61.61373 * 17 7 6 19 19 C 1.53001 * 109.46937 * 181.61215 * 17 7 6 20 20 C 1.34671 * 108.02039 * 359.97438 * 6 5 4 21 21 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 22 22 H 1.09011 * 109.46716 * 299.99572 * 1 2 3 23 23 H 1.08999 * 109.47452 * 59.99521 * 1 2 3 24 24 H 1.08999 * 109.46353 * 240.00204 * 2 1 3 25 25 H 1.09000 * 109.47262 * 120.00992 * 2 1 3 26 26 H 1.08004 * 125.64965 * 0.02562 * 4 3 2 27 27 H 0.96997 * 120.00273 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47299 * 301.60953 * 17 7 6 29 29 H 1.09000 * 109.47274 * 59.99564 * 18 17 7 30 30 H 1.08999 * 109.47436 * 180.02562 * 18 17 7 31 31 H 1.09003 * 109.47013 * 300.00160 * 18 17 7 32 32 H 1.08994 * 109.47329 * 57.14986 * 19 17 7 33 33 H 1.09004 * 109.47047 * 177.15626 * 19 17 7 34 34 H 1.09004 * 109.47188 * 297.15191 * 19 17 7 35 35 H 1.08004 * 126.58943 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2833 2.1375 -1.0869 5 7 2.7040 3.3074 -0.6902 6 6 2.7177 3.3412 0.6505 7 6 3.1393 4.5105 1.5027 8 1 3.0097 5.4352 0.9405 9 6 2.2912 4.5564 2.7476 10 1 2.5593 3.9585 3.6060 11 6 1.1729 5.3619 2.7905 12 7 0.7831 6.0039 1.7110 13 14 0.2116 5.5412 4.3822 14 1 0.8524 4.7223 5.4424 15 1 0.2020 6.9671 4.7966 16 1 -1.1834 5.0771 4.1729 17 6 4.6102 4.3528 1.8932 18 6 5.4751 4.3466 0.6312 19 6 5.0271 5.5191 2.7915 20 6 2.2886 2.1470 1.1018 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 1.8934 -0.5140 0.8899 26 1 2.1699 1.8245 -2.1144 27 1 -0.0034 6.5709 1.7413 28 1 4.7448 3.4142 2.4307 29 1 5.3404 5.2852 0.0937 30 1 6.5229 4.2338 0.9093 31 1 5.1780 3.5157 -0.0088 32 1 4.3779 5.5541 3.6663 33 1 6.0601 5.3806 3.1107 34 1 4.9405 6.4537 2.2371 35 1 2.1831 1.8492 2.1346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:51 Heat of formation + Delta-G solvation = 23.150276 kcal Electronic energy + Delta-G solvation = -15590.717042 eV Core-core repulsion = 13202.493326 eV Total energy + Delta-G solvation = -2388.223716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.60789 -37.65072 -35.38511 -34.23822 -30.87086 -30.82093 -28.40988 -27.44321 -25.24980 -24.24628 -21.63578 -21.26423 -20.11528 -18.30817 -17.73489 -16.52191 -15.97072 -15.47418 -15.22260 -14.77092 -14.63643 -14.31299 -14.20278 -13.57877 -13.38242 -13.15417 -12.90651 -12.86290 -12.75527 -12.42147 -12.14442 -12.00680 -11.78711 -11.49859 -10.99277 -10.90219 -10.59973 -10.34679 -10.07007 -8.77608 -8.02265 -6.12005 1.40444 1.42838 1.51223 1.53958 2.25275 2.46522 2.68306 3.28804 3.92648 4.07392 4.19732 4.25468 4.40030 4.47517 4.53038 4.55882 4.75289 4.86263 4.95663 5.02758 5.14689 5.17683 5.23561 5.29421 5.34487 5.55155 5.60779 5.71766 5.74108 5.84816 6.03039 6.35322 6.41464 6.78267 7.06349 7.53622 7.65541 9.06747 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.011796 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.874503 B = 2373.174474 C = 3302.764932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.463 5.463 4 C 0.159 3.841 5 N -0.544 5.544 6 C 0.035 3.965 7 C 0.115 3.885 8 H 0.014 0.986 9 C -0.498 4.498 10 H 0.058 0.942 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.946 3.054 14 H -0.258 1.258 15 H -0.284 1.284 16 H -0.289 1.289 17 C -0.079 4.079 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.071 4.071 21 H 0.103 0.897 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.119 0.881 25 H 0.098 0.902 26 H 0.229 0.771 27 H 0.255 0.745 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -12.644 -1.905 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.021 4.021 3 N -0.148 5.148 4 C -0.123 4.123 5 N -0.264 5.264 6 C -0.093 4.093 7 C 0.095 3.905 8 H 0.032 0.968 9 C -0.537 4.537 10 H 0.076 0.924 11 C -0.185 4.185 12 N -0.565 5.565 13 Si 0.772 3.228 14 H -0.181 1.181 15 H -0.210 1.210 16 H -0.216 1.216 17 C -0.098 4.098 18 C -0.183 4.183 19 C -0.180 4.180 20 C -0.202 4.202 21 H 0.122 0.878 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.137 0.863 25 H 0.116 0.884 26 H 0.245 0.755 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.667 -12.049 -2.461 12.583 hybrid contribution -1.260 -0.035 1.082 1.661 sum 1.407 -12.084 -1.379 12.243 Atomic orbital electron populations 1.22135 0.94476 1.03891 1.01667 1.22057 0.95387 0.78653 1.05966 1.45619 1.49789 1.13488 1.05938 1.25400 1.04267 0.87916 0.94688 1.70132 1.21931 1.20869 1.13456 1.21525 1.02290 0.96159 0.89366 1.17224 0.91208 0.90160 0.91901 0.96796 1.21251 1.08950 1.24543 0.98954 0.92356 1.25739 0.98439 0.95852 0.98504 1.70185 1.25437 1.31488 1.29351 0.85686 0.78276 0.77880 0.80915 1.18139 1.20983 1.21562 1.21060 0.95281 0.97905 0.95519 1.21670 0.98805 1.00374 0.97470 1.21605 0.99860 0.97117 0.99456 1.22282 1.11553 0.93937 0.92467 0.87841 0.94466 0.92835 0.86285 0.88380 0.75465 0.93634 0.92968 0.94756 0.91992 0.94230 0.93097 0.92028 0.94981 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.10 2.13 6.87 86.38 0.59 2.72 16 3 N -0.46 -15.69 2.75 -529.07 -1.46 -17.15 16 4 C 0.16 5.83 12.56 180.26 2.26 8.10 16 5 N -0.54 -26.00 10.81 -188.31 -2.04 -28.03 16 6 C 0.03 1.72 4.98 41.39 0.21 1.93 16 7 C 0.11 6.08 1.91 -12.29 -0.02 6.06 16 8 H 0.01 0.86 7.38 -2.39 -0.02 0.85 16 9 C -0.50 -27.30 6.22 25.60 0.16 -27.14 16 10 H 0.06 3.08 7.82 -2.91 -0.02 3.05 16 11 C 0.01 0.73 5.45 84.66 0.46 1.19 16 12 N -0.92 -57.34 12.84 21.45 0.28 -57.07 16 13 Si 0.95 44.42 29.54 68.60 2.03 46.44 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 C -0.08 -3.46 2.49 -10.79 -0.03 -3.48 16 18 C -0.13 -5.03 8.97 71.98 0.65 -4.38 16 19 C -0.12 -5.02 8.98 71.98 0.65 -4.37 16 20 C -0.07 -3.07 10.76 83.09 0.89 -2.18 16 21 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.23 5.97 8.06 -2.91 -0.02 5.94 16 27 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.64 6.92 -2.39 -0.02 1.63 16 32 H 0.05 2.19 7.06 -2.39 -0.02 2.17 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.16 6.77 7.95 -2.91 -0.02 6.75 16 Total: -1.00 -71.68 291.61 6.40 -65.28 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.04 Total: 14.75 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 6.56 Total: -24.22 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -3.22 Total: -102.25 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.68 6.40 -65.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.425 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds