Wall clock time and date at job start Mon Mar 30 2020 03:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47119 * 2 1 4 4 C 1.35039 * 126.39958 * 269.69069 * 3 2 1 5 5 N 1.30498 * 108.70329 * 179.82380 * 4 3 2 6 6 C 1.34130 * 109.25096 * 0.44503 * 5 4 3 7 7 C 1.50706 * 125.98796 * 179.72513 * 6 5 4 8 8 H 1.08997 * 109.47181 * 334.99821 * 7 6 5 9 9 C 1.50693 * 109.47117 * 215.00128 * 7 6 5 10 10 H 1.08009 * 119.99669 * 266.16219 * 9 7 6 11 11 C 1.37878 * 120.00322 * 86.16032 * 9 7 6 12 12 N 1.31519 * 119.99733 * 185.29886 * 11 9 7 13 13 Si 1.86796 * 119.99758 * 5.29975 * 11 9 7 14 14 H 1.48495 * 109.47336 * 84.51591 * 13 11 9 15 15 H 1.48500 * 109.47024 * 204.51475 * 13 11 9 16 16 H 1.48499 * 109.47000 * 324.51080 * 13 11 9 17 17 C 1.52999 * 109.47022 * 94.99954 * 7 6 5 18 18 C 1.52999 * 109.47254 * 183.40889 * 17 7 6 19 19 C 1.53006 * 109.47283 * 303.40672 * 17 7 6 20 20 C 1.34665 * 108.02274 * 359.72057 * 6 5 4 21 21 H 1.08995 * 109.47045 * 299.99449 * 1 2 3 22 22 H 1.08991 * 109.47262 * 59.99997 * 1 2 3 23 23 H 1.09010 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47348 * 240.00038 * 2 1 3 25 25 H 1.09001 * 109.47322 * 120.00127 * 2 1 3 26 26 H 1.08000 * 125.64610 * 359.97438 * 4 3 2 27 27 H 0.96997 * 119.99347 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.47499 * 63.40715 * 17 7 6 29 29 H 1.09002 * 109.47158 * 64.53219 * 18 17 7 30 30 H 1.08997 * 109.47732 * 184.53447 * 18 17 7 31 31 H 1.09006 * 109.46790 * 304.53439 * 18 17 7 32 32 H 1.09000 * 109.46963 * 60.00140 * 19 17 7 33 33 H 1.08992 * 109.47349 * 180.02562 * 19 17 7 34 34 H 1.09003 * 109.46596 * 300.00276 * 19 17 7 35 35 H 1.08001 * 126.59487 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2909 2.1348 -1.0869 5 7 2.6998 3.3089 -0.6903 6 6 2.7119 3.3432 0.6505 7 6 3.1263 4.5151 1.5027 8 1 3.8111 5.1494 0.9399 9 6 3.8134 4.0137 2.7465 10 1 3.2462 3.8624 3.6531 11 6 5.1662 3.7480 2.7274 12 7 5.7461 3.2125 3.7794 13 14 6.1752 4.1485 1.2072 14 1 6.5899 5.5737 1.2497 15 1 7.3813 3.2829 1.1715 16 1 5.3565 3.9071 -0.0080 17 6 1.8880 5.3236 1.8948 18 6 2.3161 6.5598 2.6881 19 6 1.1434 5.7610 0.6317 20 6 2.2890 2.1470 1.1018 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1856 1.8189 -2.1143 27 1 6.6978 3.0253 3.7657 28 1 1.2311 4.7075 2.5087 29 1 2.9067 7.2155 2.0483 30 1 1.4313 7.0926 3.0363 31 1 2.9155 6.2520 3.5450 32 1 0.8383 4.8803 0.0665 33 1 0.2615 6.3373 0.9110 34 1 1.8003 6.3772 0.0178 35 1 2.1833 1.8491 2.1345 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:55 Heat of formation + Delta-G solvation = 41.876105 kcal Electronic energy + Delta-G solvation = -15689.655987 eV Core-core repulsion = 13302.244284 eV Total energy + Delta-G solvation = -2387.411703 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24535 -36.10492 -34.19303 -32.21687 -29.74314 -29.40907 -26.91488 -25.97762 -23.57501 -22.57554 -20.28206 -19.88711 -18.34218 -16.67376 -16.50567 -14.75923 -14.41464 -14.29795 -13.60549 -13.36564 -13.23291 -12.86222 -12.47966 -12.34283 -12.15436 -11.92079 -11.46886 -11.32550 -11.26056 -10.78783 -10.59222 -10.20988 -9.94300 -9.57947 -9.45475 -9.15650 -8.90463 -8.69522 -8.39539 -7.30293 -5.99922 -3.98758 2.90496 3.42702 3.42855 3.50186 3.69075 4.14998 4.58521 4.78736 5.07092 5.19011 5.24066 5.40268 5.56182 5.64841 5.81967 5.96633 6.03135 6.03516 6.10650 6.42451 6.56189 6.68130 6.68729 6.79652 6.85354 7.06455 7.09714 7.24612 7.35017 7.55085 7.80507 7.86504 8.06097 8.58310 9.03104 9.08856 9.66417 11.12061 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.011824 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.723993 B = 2367.595275 C = 2920.778567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.470 5.470 4 C 0.148 3.852 5 N -0.497 5.497 6 C 0.041 3.959 7 C 0.095 3.905 8 H 0.039 0.961 9 C -0.502 4.502 10 H 0.074 0.926 11 C 0.079 3.921 12 N -0.902 5.902 13 Si 0.860 3.140 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.246 1.246 17 C -0.073 4.073 18 C -0.135 4.135 19 C -0.139 4.139 20 C -0.044 4.044 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.187 0.813 27 H 0.261 0.739 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -4.477 -7.198 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.157 5.157 4 C -0.133 4.133 5 N -0.217 5.217 6 C -0.087 4.087 7 C 0.075 3.925 8 H 0.057 0.943 9 C -0.540 4.540 10 H 0.092 0.908 11 C -0.123 4.123 12 N -0.540 5.540 13 Si 0.687 3.313 14 H -0.203 1.203 15 H -0.223 1.223 16 H -0.169 1.169 17 C -0.092 4.092 18 C -0.192 4.192 19 C -0.197 4.197 20 C -0.174 4.174 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.204 0.796 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.103 -4.037 -7.637 12.550 hybrid contribution 0.523 -0.774 -0.310 0.984 sum -8.580 -4.811 -7.947 12.646 Atomic orbital electron populations 1.22144 0.94851 1.02332 1.03109 1.21650 0.95001 0.81338 1.03823 1.45446 1.50687 1.12074 1.07513 1.24637 1.06720 0.88987 0.92961 1.70225 1.19249 1.18890 1.13290 1.21691 1.01156 0.97054 0.88778 1.17643 0.93079 0.88760 0.93069 0.94255 1.20878 0.93280 1.44035 0.95824 0.90756 1.24959 0.97908 0.93967 0.95493 1.69917 1.11165 1.43142 1.29732 0.87046 0.79872 0.78323 0.86080 1.20349 1.22266 1.16887 1.20965 0.97055 0.96248 0.94950 1.21731 0.99602 0.96888 1.01009 1.21835 0.98825 1.00464 0.98531 1.22460 1.09952 0.93223 0.91740 0.91801 0.92157 0.91260 0.89824 0.89533 0.79573 0.92907 0.92565 0.93964 0.94897 0.91083 0.93096 0.94771 0.93479 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.25 6.87 -4.04 -0.03 1.22 16 3 N -0.47 -8.06 2.75 -118.58 -0.33 -8.39 16 4 C 0.15 2.66 12.56 -90.38 -1.14 1.52 16 5 N -0.50 -11.02 10.79 -10.87 -0.12 -11.14 16 6 C 0.04 0.95 4.02 -82.85 -0.33 0.62 16 7 C 0.09 2.29 1.40 -92.92 -0.13 2.16 16 8 H 0.04 1.02 5.84 -51.93 -0.30 0.72 16 9 C -0.50 -13.70 6.99 -34.44 -0.24 -13.94 16 10 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 11 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 12 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 13 Si 0.86 22.56 26.71 -169.99 -4.54 18.02 16 14 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 16 H -0.25 -6.53 6.60 56.52 0.37 -6.16 16 17 C -0.07 -1.53 2.49 -90.62 -0.23 -1.76 16 18 C -0.13 -2.66 9.07 37.16 0.34 -2.32 16 19 C -0.14 -2.64 8.89 37.16 0.33 -2.31 16 20 C -0.04 -0.92 10.76 -16.56 -0.18 -1.10 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.52 7.18 -51.93 -0.37 1.15 16 32 H 0.05 1.00 6.77 -51.93 -0.35 0.65 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 3.54 7.95 -52.49 -0.42 3.12 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -32.10 287.36 -6.88 -38.98 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.68 Total: -0.17 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.32 Total: -15.01 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.33 Total: -46.15 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.54 Total: 18.02 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.10 -6.88 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.861 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds