Wall clock time and date at job start Mon Mar 30 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47119 * 2 1 4 4 C 1.35039 * 126.39958 * 269.69069 * 3 2 1 5 5 N 1.30498 * 108.70329 * 179.82380 * 4 3 2 6 6 C 1.34130 * 109.25096 * 0.44503 * 5 4 3 7 7 C 1.50706 * 125.98796 * 179.72513 * 6 5 4 8 8 H 1.08997 * 109.47181 * 334.99821 * 7 6 5 9 9 C 1.50693 * 109.47117 * 215.00128 * 7 6 5 10 10 H 1.08009 * 119.99669 * 266.16219 * 9 7 6 11 11 C 1.37878 * 120.00322 * 86.16032 * 9 7 6 12 12 N 1.31519 * 119.99733 * 185.29886 * 11 9 7 13 13 Si 1.86796 * 119.99758 * 5.29975 * 11 9 7 14 14 H 1.48495 * 109.47336 * 84.51591 * 13 11 9 15 15 H 1.48500 * 109.47024 * 204.51475 * 13 11 9 16 16 H 1.48499 * 109.47000 * 324.51080 * 13 11 9 17 17 C 1.52999 * 109.47022 * 94.99954 * 7 6 5 18 18 C 1.52999 * 109.47254 * 183.40889 * 17 7 6 19 19 C 1.53006 * 109.47283 * 303.40672 * 17 7 6 20 20 C 1.34665 * 108.02274 * 359.72057 * 6 5 4 21 21 H 1.08995 * 109.47045 * 299.99449 * 1 2 3 22 22 H 1.08991 * 109.47262 * 59.99997 * 1 2 3 23 23 H 1.09010 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47348 * 240.00038 * 2 1 3 25 25 H 1.09001 * 109.47322 * 120.00127 * 2 1 3 26 26 H 1.08000 * 125.64610 * 359.97438 * 4 3 2 27 27 H 0.96997 * 119.99347 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.47499 * 63.40715 * 17 7 6 29 29 H 1.09002 * 109.47158 * 64.53219 * 18 17 7 30 30 H 1.08997 * 109.47732 * 184.53447 * 18 17 7 31 31 H 1.09006 * 109.46790 * 304.53439 * 18 17 7 32 32 H 1.09000 * 109.46963 * 60.00140 * 19 17 7 33 33 H 1.08992 * 109.47349 * 180.02562 * 19 17 7 34 34 H 1.09003 * 109.46596 * 300.00276 * 19 17 7 35 35 H 1.08001 * 126.59487 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2909 2.1348 -1.0869 5 7 2.6998 3.3089 -0.6903 6 6 2.7119 3.3432 0.6505 7 6 3.1263 4.5151 1.5027 8 1 3.8111 5.1494 0.9399 9 6 3.8134 4.0137 2.7465 10 1 3.2462 3.8624 3.6531 11 6 5.1662 3.7480 2.7274 12 7 5.7461 3.2125 3.7794 13 14 6.1752 4.1485 1.2072 14 1 6.5899 5.5737 1.2497 15 1 7.3813 3.2829 1.1715 16 1 5.3565 3.9071 -0.0080 17 6 1.8880 5.3236 1.8948 18 6 2.3161 6.5598 2.6881 19 6 1.1434 5.7610 0.6317 20 6 2.2890 2.1470 1.1018 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1856 1.8189 -2.1143 27 1 6.6978 3.0253 3.7657 28 1 1.2311 4.7075 2.5087 29 1 2.9067 7.2155 2.0483 30 1 1.4313 7.0926 3.0363 31 1 2.9155 6.2520 3.5450 32 1 0.8383 4.8803 0.0665 33 1 0.2615 6.3373 0.9110 34 1 1.8003 6.3772 0.0178 35 1 2.1833 1.8491 2.1345 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:54 Heat of formation + Delta-G solvation = 23.463730 kcal Electronic energy + Delta-G solvation = -15690.454407 eV Core-core repulsion = 13302.244284 eV Total energy + Delta-G solvation = -2388.210124 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.74335 -37.80176 -35.43561 -34.34972 -31.20973 -30.89424 -28.65852 -27.55854 -24.99345 -24.20417 -21.80146 -21.34961 -20.06296 -18.81162 -17.84307 -16.46282 -16.05621 -15.52855 -15.12792 -15.02070 -14.78036 -14.28868 -14.27384 -14.02912 -13.49494 -13.25206 -12.91475 -12.89405 -12.77867 -12.34956 -12.14115 -12.03646 -11.76041 -11.49971 -11.21504 -11.04082 -10.76055 -10.48789 -10.15699 -8.91565 -8.24348 -6.23106 1.31994 1.34666 1.43379 1.57096 2.16546 2.40815 2.52078 3.12998 3.89230 3.99083 4.16597 4.21246 4.32648 4.43537 4.45940 4.47055 4.74610 4.87030 4.91496 4.94863 4.98651 5.09914 5.18136 5.23888 5.27175 5.42258 5.47943 5.60438 5.63927 5.78811 5.81845 6.16012 6.37244 6.66654 6.84464 7.42832 7.50294 8.91097 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.011824 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.723993 B = 2367.595275 C = 2920.778567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.463 5.463 4 C 0.166 3.834 5 N -0.537 5.537 6 C 0.016 3.984 7 C 0.095 3.905 8 H 0.020 0.980 9 C -0.483 4.483 10 H 0.045 0.955 11 C 0.029 3.971 12 N -0.944 5.944 13 Si 0.915 3.085 14 H -0.272 1.272 15 H -0.297 1.297 16 H -0.249 1.249 17 C -0.074 4.074 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.057 4.057 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.235 0.765 27 H 0.261 0.739 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 -5.108 -9.384 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.148 5.148 4 C -0.115 4.115 5 N -0.257 5.257 6 C -0.111 4.111 7 C 0.075 3.925 8 H 0.039 0.961 9 C -0.521 4.521 10 H 0.063 0.937 11 C -0.168 4.168 12 N -0.585 5.585 13 Si 0.742 3.258 14 H -0.197 1.197 15 H -0.224 1.224 16 H -0.173 1.173 17 C -0.093 4.093 18 C -0.188 4.188 19 C -0.183 4.183 20 C -0.189 4.189 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.135 0.865 25 H 0.106 0.894 26 H 0.251 0.749 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.479 -4.684 -9.827 15.110 hybrid contribution 0.830 -0.652 0.358 1.114 sum -9.649 -5.337 -9.469 14.534 Atomic orbital electron populations 1.22091 0.93215 1.04062 1.02254 1.22089 0.96302 0.78543 1.05567 1.45661 1.49502 1.13620 1.06004 1.25473 1.03638 0.87716 0.94719 1.70136 1.21546 1.21478 1.12577 1.21343 1.03079 0.97113 0.89605 1.17532 0.93859 0.89568 0.91509 0.96139 1.21021 0.92943 1.42049 0.96107 0.93698 1.25554 0.99101 0.94580 0.97562 1.70025 1.11392 1.45519 1.31551 0.86172 0.78310 0.78203 0.83154 1.19740 1.22435 1.17293 1.20946 0.95897 0.96265 0.96184 1.21677 1.00628 0.96667 0.99846 1.21677 0.99410 1.00256 0.96955 1.22270 1.10667 0.93568 0.92407 0.93720 0.91901 0.88238 0.86512 0.89436 0.74936 0.92996 0.93148 0.93603 0.91746 0.93769 0.94035 0.91976 0.93793 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.10 1.97 6.87 86.38 0.59 2.57 16 3 N -0.46 -14.85 2.75 -529.07 -1.46 -16.30 16 4 C 0.17 5.49 12.56 180.26 2.26 7.75 16 5 N -0.54 -23.01 10.79 -188.32 -2.03 -25.04 16 6 C 0.02 0.75 4.02 41.39 0.17 0.92 16 7 C 0.10 4.67 1.40 -12.29 -0.02 4.66 16 8 H 0.02 1.07 5.84 -2.39 -0.01 1.06 16 9 C -0.48 -27.16 6.99 25.60 0.18 -26.98 16 10 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 11 C 0.03 1.73 5.47 84.65 0.46 2.20 16 12 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 13 Si 0.92 47.59 26.71 68.60 1.83 49.42 16 14 H -0.27 -13.71 7.11 99.48 0.71 -13.01 16 15 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 16 H -0.25 -13.06 6.60 99.48 0.66 -12.40 16 17 C -0.07 -3.08 2.49 -10.79 -0.03 -3.11 16 18 C -0.13 -5.07 9.07 71.98 0.65 -4.42 16 19 C -0.13 -4.55 8.89 71.98 0.64 -3.91 16 20 C -0.06 -2.39 10.76 83.09 0.89 -1.50 16 21 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.23 5.19 8.06 -2.91 -0.02 5.16 16 27 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.92 7.18 -2.38 -0.02 1.90 16 32 H 0.04 1.57 6.77 -2.39 -0.02 1.56 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.16 6.79 7.95 -2.91 -0.02 6.77 16 Total: -1.00 -70.98 287.36 6.18 -64.80 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.99 Total: 9.64 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 6.55 Total: -23.77 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -3.19 Total: -100.09 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.83 Total: 49.42 kcal Total: -70.98 6.18 -64.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.264 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds