Wall clock time and date at job start Mon Mar 30 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86800 * 119.99617 * 2 1 4 4 H 1.48501 * 109.47301 * 274.82315 * 3 2 1 5 5 H 1.48495 * 109.47468 * 34.82895 * 3 2 1 6 6 H 1.48507 * 109.46951 * 154.82577 * 3 2 1 7 7 C 1.40050 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00039 * 172.12525 * 7 2 1 9 9 C 1.39652 * 119.99721 * 352.12735 * 7 2 1 10 10 C 1.40549 * 126.01539 * 338.78367 * 9 7 2 11 11 C 1.36661 * 107.88845 * 179.82949 * 10 9 7 12 12 C 1.39823 * 107.91141 * 0.42418 * 11 10 9 13 13 C 1.40227 * 133.40327 * 179.70476 * 12 11 10 14 14 Cl 1.73603 * 120.26207 * 0.05225 * 13 12 11 15 15 N 1.31842 * 119.48067 * 180.02562 * 13 12 11 16 16 C 1.33010 * 121.77333 * 0.02562 * 15 13 12 17 17 N 1.30799 * 121.97782 * 0.02562 * 16 15 13 18 18 N 1.37319 * 126.01317 * 159.08690 * 9 7 2 19 19 H 0.97000 * 120.00425 * 359.97438 * 1 2 3 20 20 H 1.07998 * 126.05592 * 359.97239 * 10 9 7 21 21 H 1.08000 * 126.04238 * 180.15980 * 11 10 9 22 22 H 1.08005 * 119.00952 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3884 2.1054 -1.3951 5 1 1.4951 2.6211 0.7996 6 1 3.5877 1.4130 0.5956 7 6 2.0093 -1.2128 -0.0005 8 1 3.0816 -1.2171 -0.1287 9 6 1.3210 -2.4166 0.1646 10 6 0.0489 -2.5687 0.7427 11 6 -0.2695 -3.8974 0.7131 12 6 0.7997 -4.5829 0.1283 13 6 1.0375 -5.9354 -0.1553 14 17 -0.1525 -7.1351 0.2427 15 7 2.1717 -6.2888 -0.7272 16 6 3.1041 -5.3951 -1.0450 17 7 2.9489 -4.1181 -0.8082 18 7 1.7704 -3.6608 -0.2040 19 1 -0.4851 0.8400 0.0004 20 1 -0.5686 -1.7757 1.1379 21 1 -1.1834 -4.3402 1.0807 22 1 4.0171 -5.7341 -1.5119 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261212357.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:07 Heat of formation + Delta-G solvation = 96.157594 kcal Electronic energy + Delta-G solvation = -12500.522897 eV Core-core repulsion = 10083.248986 eV Total energy + Delta-G solvation = -2417.273911 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.45030 -37.09414 -36.20010 -33.84683 -32.38576 -29.27685 -28.92661 -25.90618 -23.25536 -21.54210 -19.79511 -18.30184 -17.12047 -16.06617 -15.17241 -14.60183 -14.43866 -13.57922 -13.34234 -12.34592 -12.29033 -12.01385 -11.65147 -11.40514 -11.28208 -11.06072 -10.68730 -10.35333 -10.18521 -9.68850 -9.56684 -8.61976 -7.67192 -7.20983 -7.07567 -4.60063 1.27789 2.23034 2.45594 2.92793 2.93642 2.98906 3.35980 3.73548 3.92467 4.36203 4.96312 5.04277 5.59247 6.02731 6.43565 6.47131 6.65023 6.81289 7.21871 7.35121 7.49174 7.74149 8.08497 8.19911 8.42820 8.59891 9.28860 9.85980 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.051273 B = 0.008457 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.970439 B = 3309.951099 C = 3814.650601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.078 3.922 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.424 4.424 8 H 0.091 0.909 9 C 0.292 3.708 10 C -0.189 4.189 11 C -0.096 4.096 12 C -0.171 4.171 13 C 0.327 3.673 14 Cl -0.039 7.039 15 N -0.632 5.632 16 C 0.285 3.715 17 N -0.336 5.336 18 N -0.319 5.319 19 H 0.289 0.711 20 H 0.159 0.841 21 H 0.130 0.870 22 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -2.081 1.091 2.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.109 0.891 9 C 0.172 3.828 10 C -0.212 4.212 11 C -0.126 4.126 12 C -0.275 4.275 13 C 0.147 3.853 14 Cl -0.011 7.011 15 N -0.359 5.359 16 C -0.015 4.015 17 N -0.149 5.149 18 N -0.094 5.094 19 H 0.100 0.900 20 H 0.177 0.823 21 H 0.148 0.852 22 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.269 -2.229 0.587 2.320 hybrid contribution -0.296 0.508 0.194 0.619 sum -0.027 -1.720 0.781 1.889 Atomic orbital electron populations 1.69769 1.07589 1.30261 1.33110 1.25933 0.95046 1.01654 0.91776 0.85882 0.80303 0.78821 0.79415 1.19141 1.19605 1.18141 1.18774 0.96081 0.88277 1.42906 0.89128 1.18236 0.91476 0.80984 0.92060 1.21410 0.96982 0.95230 1.07613 1.20683 0.96339 0.94214 1.01354 1.18652 0.96761 0.89297 1.22812 1.21019 0.89099 0.85469 0.89757 1.98347 1.54133 1.57288 1.91346 1.67485 1.03537 1.38495 1.26400 1.24993 0.97051 0.84705 0.94771 1.75641 1.05630 1.16460 1.17210 1.45322 1.09923 1.06736 1.47373 0.90007 0.82330 0.85244 0.78516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.04 10.91 55.56 0.61 -17.43 14 2 C 0.08 1.78 5.43 -17.27 -0.09 1.69 14 3 Si 0.93 17.20 29.57 -169.99 -5.03 12.18 14 4 H -0.27 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.39 14 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 7 C -0.42 -10.74 9.42 -38.37 -0.36 -11.10 14 8 H 0.09 2.29 7.86 -52.49 -0.41 1.88 14 9 C 0.29 7.63 6.70 -84.01 -0.56 7.07 14 10 C -0.19 -4.55 9.51 -39.28 -0.37 -4.93 14 11 C -0.10 -2.17 10.69 -39.56 -0.42 -2.59 14 12 C -0.17 -4.12 6.74 -83.77 -0.56 -4.69 14 13 C 0.33 7.28 7.37 -16.80 -0.12 7.15 14 14 Cl -0.04 -0.71 29.03 -51.86 -1.51 -2.21 14 15 N -0.63 -13.93 10.39 -11.38 -0.12 -14.05 14 16 C 0.28 6.04 12.37 -91.94 -1.14 4.90 14 17 N -0.34 -8.20 12.00 29.26 0.35 -7.85 14 18 N -0.32 -8.31 4.09 -8.29 -0.03 -8.34 14 19 H 0.29 5.94 8.30 -40.82 -0.34 5.60 14 20 H 0.16 3.72 6.55 -52.49 -0.34 3.38 14 21 H 0.13 2.46 8.06 -52.49 -0.42 2.04 14 22 H 0.20 3.19 8.06 -52.48 -0.42 2.76 14 LS Contribution 224.35 15.07 3.38 3.38 Total: -1.00 -27.70 224.35 -6.72 -34.42 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -0.74 Total: 2.39 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.64 Total: -2.49 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.80 Total: -47.68 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.21 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -27.70 -6.72 -34.42 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212357.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.581 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds