Wall clock time and date at job start Mon Mar 30 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86797 * 119.99845 * 2 1 4 4 H 1.48502 * 109.46965 * 275.41141 * 3 2 1 5 5 H 1.48498 * 109.47096 * 35.40971 * 3 2 1 6 6 H 1.48497 * 109.47029 * 155.41002 * 3 2 1 7 7 C 1.39869 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00090 * 341.71176 * 7 2 1 9 9 C 1.41361 * 119.99892 * 161.70866 * 7 2 1 10 10 C 1.40376 * 120.08547 * 330.14673 * 9 7 2 11 11 C 1.39107 * 119.34486 * 180.25342 * 10 9 7 12 12 C 1.46719 * 133.59031 * 180.36680 * 11 10 9 13 13 N 1.29691 * 107.37140 * 179.53531 * 12 11 10 14 14 O 1.41312 * 109.83438 * 359.77825 * 13 12 11 15 15 C 1.34793 * 109.43283 * 0.02562 * 14 13 12 16 16 C 1.39585 * 133.09917 * 180.02562 * 15 14 13 17 17 Cl 1.73606 * 119.81308 * 359.97438 * 16 15 14 18 18 C 1.36207 * 120.37819 * 180.02562 * 16 15 14 19 19 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.32504 * 359.97438 * 10 9 7 21 21 H 1.08005 * 126.31715 * 359.34890 * 12 11 10 22 22 H 1.07996 * 119.74702 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3759 2.1124 -1.3939 5 1 1.5021 2.6169 0.8112 6 1 3.5928 1.4099 0.5826 7 6 2.0082 -1.2113 0.0005 8 1 1.5091 -2.1229 0.2945 9 6 3.3682 -1.2424 -0.3837 10 6 3.8579 -0.3129 -1.3147 11 6 5.1977 -0.3609 -1.6858 12 6 6.0234 0.4363 -2.5998 13 7 7.2264 -0.0461 -2.5554 14 8 7.2742 -1.1327 -1.6532 15 6 6.0513 -1.3278 -1.1209 16 6 5.5489 -2.2445 -0.1959 17 17 6.6024 -3.4390 0.4949 18 6 4.2366 -2.2080 0.1670 19 1 -0.4850 0.8400 -0.0004 20 1 3.1998 0.4292 -1.7421 21 1 5.6901 1.2692 -3.2013 22 1 3.8586 -2.9224 0.8832 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213052.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:11 Heat of formation + Delta-G solvation = 28.833137 kcal Electronic energy + Delta-G solvation = -12523.536479 eV Core-core repulsion = 10071.050410 eV Total energy + Delta-G solvation = -2452.486070 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.38910 -38.87692 -37.45624 -35.32981 -34.48640 -31.89806 -31.16333 -27.06726 -24.34725 -23.15799 -22.64454 -19.73280 -18.53675 -17.88966 -16.83863 -16.69829 -16.13115 -15.56652 -14.80371 -14.65091 -14.19942 -13.92983 -13.45201 -13.00150 -12.83716 -12.69431 -12.20632 -12.11292 -11.92146 -11.83672 -11.69419 -11.07195 -9.81425 -9.35108 -8.95207 -6.56390 -0.26011 0.39460 1.11555 1.15392 1.29081 1.44501 1.50923 1.63001 2.09123 2.35180 3.18329 3.42228 3.52398 4.06621 4.31979 4.39974 4.66705 4.78998 5.06317 5.18030 5.28901 5.49793 5.71358 6.14521 6.28488 6.45894 6.66687 8.11589 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.030394 B = 0.011710 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.018408 B = 2390.489581 C = 3125.526567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.054 3.946 3 Si 0.951 3.049 4 H -0.242 1.242 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.463 4.463 8 H 0.073 0.927 9 C 0.066 3.934 10 C -0.186 4.186 11 C -0.145 4.145 12 C 0.117 3.883 13 N -0.316 5.316 14 O -0.119 6.119 15 C -0.041 4.041 16 C -0.002 4.002 17 Cl -0.070 7.070 18 C -0.131 4.131 19 H 0.298 0.702 20 H 0.128 0.872 21 H 0.252 0.748 22 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 2.485 -1.759 6.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.163 4.163 3 Si 0.774 3.226 4 H -0.166 1.166 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.091 0.909 9 C 0.062 3.938 10 C -0.208 4.208 11 C -0.149 4.149 12 C -0.084 4.084 13 N -0.059 5.059 14 O -0.131 6.131 15 C -0.095 4.095 16 C -0.030 4.030 17 Cl -0.041 7.041 18 C -0.152 4.152 19 H 0.109 0.891 20 H 0.145 0.855 21 H 0.268 0.732 22 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.662 2.449 -2.074 7.395 hybrid contribution -0.788 0.191 0.498 0.952 sum 5.874 2.639 -1.576 6.629 Atomic orbital electron populations 1.69712 1.09123 1.31977 1.34867 1.26758 0.95293 1.03954 0.90324 0.85676 0.79600 0.76860 0.80505 1.16649 1.20356 1.17936 1.19364 0.93224 0.96342 1.40229 0.90918 1.17585 0.93072 0.91759 0.91334 1.20747 0.93209 1.04720 1.02096 1.20753 0.95809 0.97466 1.00882 1.26690 0.89060 0.98041 0.94599 1.79524 1.20139 0.98831 1.07409 1.88948 1.26614 1.45347 1.52154 1.19603 0.86562 1.01057 1.02248 1.19262 0.91566 0.93521 0.98673 1.98309 1.66436 1.55691 1.83713 1.20981 0.89598 1.02709 1.01877 0.89085 0.85482 0.73183 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.73 13.93 21.82 0.30 -40.43 14 2 C 0.05 2.55 5.40 85.23 0.46 3.01 14 3 Si 0.95 36.89 24.52 68.60 1.68 38.58 14 4 H -0.24 -8.40 6.71 99.48 0.67 -7.74 14 5 H -0.28 -10.32 7.11 99.48 0.71 -9.61 14 6 H -0.26 -10.36 6.87 99.48 0.68 -9.67 14 7 C -0.46 -22.77 9.56 23.43 0.22 -22.55 14 8 H 0.07 3.82 8.06 -2.91 -0.02 3.80 14 9 C 0.07 2.98 5.10 -21.30 -0.11 2.87 14 10 C -0.19 -7.80 7.23 23.00 0.17 -7.64 14 11 C -0.15 -5.74 6.33 -20.22 -0.13 -5.87 14 12 C 0.12 3.67 12.33 87.23 1.08 4.75 14 13 N -0.32 -11.48 12.80 -52.77 -0.68 -12.16 14 14 O -0.12 -4.97 12.05 30.25 0.36 -4.60 14 15 C -0.04 -1.74 7.28 23.22 0.17 -1.57 14 16 C 0.00 -0.08 6.29 22.12 0.14 0.06 14 17 Cl -0.07 -2.47 28.94 -2.72 -0.08 -2.55 14 18 C -0.13 -5.48 9.45 22.49 0.21 -5.27 14 19 H 0.30 13.05 8.30 -92.71 -0.77 12.28 14 20 H 0.13 5.01 4.74 -2.91 -0.01 5.00 14 21 H 0.25 4.91 8.06 -2.91 -0.02 4.89 14 22 H 0.14 5.51 8.06 -2.91 -0.02 5.48 14 Total: -1.00 -53.96 219.10 5.01 -48.95 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.20 Total: 4.42 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 2.21 Total: -32.21 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.37 Total: -52.59 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: 0.36 Total: -4.60 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 1.68 Total: 38.58 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.08 Total: -2.55 kcal Total: -53.96 5.01 -48.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213052.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.787 kcal (2) G-P(sol) polarization free energy of solvation -53.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds