Wall clock time and date at job start Mon Mar 30 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 109.47376 * 2 1 4 4 N 1.40084 * 126.03639 * 270.15344 * 3 2 1 5 5 C 1.30841 * 108.20320 * 180.22807 * 4 3 2 6 6 C 1.39871 * 108.19984 * 359.78474 * 5 4 3 7 7 C 1.34945 * 126.03545 * 89.99991 * 3 2 1 8 8 C 1.50702 * 126.12795 * 0.03596 * 7 3 2 9 9 H 1.09001 * 109.46874 * 334.71634 * 8 7 3 10 10 C 1.50699 * 109.46793 * 94.71468 * 8 7 3 11 11 H 1.08001 * 120.00094 * 61.96821 * 10 8 7 12 12 C 1.37877 * 119.99930 * 241.96204 * 10 8 7 13 13 N 1.31512 * 120.00004 * 7.09248 * 12 10 8 14 14 Si 1.86797 * 120.00152 * 187.08451 * 12 10 8 15 15 H 1.48502 * 109.47295 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47260 * 300.00794 * 14 12 10 17 17 H 1.48505 * 109.47161 * 60.00479 * 14 12 10 18 18 C 1.53004 * 109.47355 * 214.71473 * 8 7 3 19 19 C 1.52997 * 109.46911 * 65.29450 * 18 8 7 20 20 C 1.52999 * 109.47177 * 185.29446 * 18 8 7 21 21 H 1.09005 * 109.47159 * 60.00059 * 1 2 3 22 22 H 1.09004 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47187 * 300.00149 * 1 2 3 24 24 H 1.09003 * 109.47187 * 239.99851 * 2 1 3 25 25 H 1.08997 * 109.47464 * 120.00030 * 2 1 3 26 26 H 1.08002 * 125.90012 * 179.74607 * 5 4 3 27 27 H 1.08004 * 126.03915 * 180.02562 * 6 5 4 28 28 H 0.97001 * 119.99812 * 356.87575 * 13 12 10 29 29 H 1.08996 * 109.47094 * 305.29754 * 18 8 7 30 30 H 1.09000 * 109.47468 * 60.00266 * 19 18 8 31 31 H 1.09001 * 109.47272 * 180.02562 * 19 18 8 32 32 H 1.09004 * 109.47544 * 299.99853 * 19 18 8 33 33 H 1.08997 * 109.46928 * 65.76527 * 20 18 8 34 34 H 1.09000 * 109.46882 * 185.76193 * 20 18 8 35 35 H 1.09001 * 109.46611 * 305.76582 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2902 2.1592 -1.1328 5 6 2.7111 3.3315 -0.7321 6 6 2.7160 3.3392 0.6666 7 6 2.2830 2.1297 1.0912 8 6 2.1298 1.6942 2.5258 9 1 1.3844 0.9013 2.5872 10 6 3.4510 1.1825 3.0392 11 1 4.3049 1.8423 3.0843 12 6 3.5697 -0.1278 3.4514 13 7 2.5744 -0.9676 3.2679 14 14 5.1443 -0.7105 4.2702 15 1 5.0195 -2.1493 4.6156 16 1 6.2855 -0.5225 3.3388 17 1 5.3799 0.0773 5.5069 18 6 1.6792 2.8846 3.3749 19 6 0.2789 3.3207 2.9392 20 6 1.6509 2.4777 4.8495 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.0047 4.1513 -1.3710 27 1 3.0126 4.1650 1.2964 28 1 1.7403 -0.6546 2.8840 29 1 2.3759 3.7119 3.2395 30 1 -0.4179 2.4935 3.0746 31 1 -0.0420 4.1691 3.5437 32 1 0.2990 3.6107 1.8886 33 1 2.6652 2.2652 5.1872 34 1 1.2333 3.2911 5.4429 35 1 1.0341 1.5869 4.9687 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261215578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:28 Heat of formation + Delta-G solvation = 50.477506 kcal Electronic energy + Delta-G solvation = -16060.654038 eV Core-core repulsion = 13673.615319 eV Total energy + Delta-G solvation = -2387.038719 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40285 -36.12756 -33.80683 -32.45730 -29.88003 -28.57363 -26.77748 -25.87679 -23.34780 -23.02568 -20.62453 -19.35960 -18.46028 -16.90242 -15.96973 -14.59005 -14.18834 -13.85280 -13.61602 -13.50210 -13.16819 -12.77994 -12.58222 -12.11461 -11.83623 -11.61877 -11.46191 -11.29896 -10.89664 -10.71814 -10.53044 -10.35687 -10.20774 -10.11182 -9.66801 -9.36261 -9.00592 -8.56383 -8.21520 -7.50343 -6.51803 -4.21728 2.87997 3.35752 3.37789 3.39965 3.56142 3.75989 4.41293 5.15040 5.28271 5.53833 5.62302 5.63941 5.81667 5.87690 5.90275 6.03762 6.13894 6.20801 6.35016 6.43324 6.47245 6.54375 6.58810 6.67185 6.72949 6.86124 6.99658 7.15656 7.31247 7.41104 7.54622 7.91439 8.07204 8.28796 8.64791 8.70256 9.45032 10.83642 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.012272 C = 0.010644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.357431 B = 2281.065264 C = 2629.892591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 N -0.370 5.370 4 N -0.335 5.335 5 C 0.037 3.963 6 C -0.311 4.311 7 C 0.153 3.847 8 C 0.078 3.922 9 H 0.056 0.944 10 C -0.575 4.575 11 H 0.055 0.945 12 C 0.027 3.973 13 N -0.908 5.908 14 Si 1.065 2.935 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.285 1.285 18 C -0.076 4.076 19 C -0.147 4.147 20 C -0.124 4.124 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.167 0.833 27 H 0.132 0.868 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 4.079 -1.522 5.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.001 3.999 3 N -0.151 5.151 4 N -0.156 5.156 5 C -0.149 4.149 6 C -0.340 4.340 7 C 0.025 3.975 8 C 0.058 3.942 9 H 0.074 0.926 10 C -0.614 4.614 11 H 0.073 0.927 12 C -0.177 4.177 13 N -0.546 5.546 14 Si 0.893 3.107 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.211 1.211 18 C -0.096 4.096 19 C -0.205 4.205 20 C -0.181 4.181 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.129 0.871 26 H 0.184 0.816 27 H 0.150 0.850 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.559 1.844 -1.926 3.696 hybrid contribution -0.447 1.952 -0.109 2.005 sum -3.006 3.796 -2.035 5.252 Atomic orbital electron populations 1.22133 0.95366 1.02314 1.02345 1.21697 0.94350 0.78921 1.04910 1.48472 1.51709 1.11541 1.03408 1.77100 1.24767 1.04371 1.09352 1.23551 1.00365 0.95655 0.95291 1.20955 1.19307 0.99706 0.94059 1.22230 0.93158 0.90171 0.91954 1.17975 0.98665 0.94230 0.83367 0.92600 1.21751 0.95706 0.98941 1.44990 0.92676 1.25857 1.03737 0.92965 0.95142 1.70953 1.04777 1.36432 1.42470 0.83579 0.74353 0.76334 0.76446 1.20704 1.21440 1.21093 1.21100 0.94557 0.98311 0.95625 1.21932 0.98029 0.99859 1.00652 1.21589 1.02326 0.98975 0.95224 0.92543 0.91082 0.92183 0.90199 0.87107 0.81574 0.85043 0.91926 0.92298 0.93797 0.93992 0.93203 0.91652 0.95141 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 37.15 0.38 -2.34 16 2 C 0.12 2.44 6.75 -4.04 -0.03 2.42 16 3 N -0.37 -8.19 3.61 -57.14 -0.21 -8.40 16 4 N -0.33 -7.28 12.58 30.63 0.39 -6.90 16 5 C 0.04 0.73 12.03 -17.36 -0.21 0.52 16 6 C -0.31 -6.58 9.45 -40.01 -0.38 -6.96 16 7 C 0.15 3.48 4.99 -82.27 -0.41 3.07 16 8 C 0.08 1.81 1.67 -92.92 -0.16 1.65 16 9 H 0.06 1.37 5.11 -51.93 -0.27 1.10 16 10 C -0.58 -14.78 6.88 -34.44 -0.24 -15.02 16 11 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 12 C 0.03 0.71 5.45 -17.82 -0.10 0.61 16 13 N -0.91 -24.54 13.20 55.43 0.73 -23.81 16 14 Si 1.07 23.82 29.91 -169.99 -5.08 18.73 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 C -0.08 -1.55 2.21 -90.62 -0.20 -1.75 16 19 C -0.15 -2.64 9.00 37.16 0.33 -2.31 16 20 C -0.12 -2.43 8.74 37.16 0.32 -2.11 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.11 2.45 5.82 -51.93 -0.30 2.15 16 26 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 27 H 0.13 2.59 7.23 -52.48 -0.38 2.21 16 28 H 0.27 7.05 5.04 -40.82 -0.21 6.85 16 29 H 0.06 1.20 7.01 -51.93 -0.36 0.83 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.92 6.99 -51.93 -0.36 0.55 16 33 H 0.06 1.37 7.30 -51.93 -0.38 0.99 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 283.55 15.07 4.27 4.27 Total: -1.00 -28.21 283.55 -5.85 -34.06 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.27 Total: 4.26 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.68 Total: -22.22 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.91 Total: -39.10 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.08 Total: 18.73 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.21 -5.85 -34.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.537 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds