Wall clock time and date at job start Mon Mar 30 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 109.47376 * 2 1 4 4 N 1.40084 * 126.03639 * 270.15344 * 3 2 1 5 5 C 1.30841 * 108.20320 * 180.22807 * 4 3 2 6 6 C 1.39871 * 108.19984 * 359.78474 * 5 4 3 7 7 C 1.34945 * 126.03545 * 89.99991 * 3 2 1 8 8 C 1.50702 * 126.12795 * 0.03596 * 7 3 2 9 9 H 1.09001 * 109.46874 * 334.71634 * 8 7 3 10 10 C 1.50699 * 109.46793 * 94.71468 * 8 7 3 11 11 H 1.08001 * 120.00094 * 61.96821 * 10 8 7 12 12 C 1.37877 * 119.99930 * 241.96204 * 10 8 7 13 13 N 1.31512 * 120.00004 * 7.09248 * 12 10 8 14 14 Si 1.86797 * 120.00152 * 187.08451 * 12 10 8 15 15 H 1.48502 * 109.47295 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47260 * 300.00794 * 14 12 10 17 17 H 1.48505 * 109.47161 * 60.00479 * 14 12 10 18 18 C 1.53004 * 109.47355 * 214.71473 * 8 7 3 19 19 C 1.52997 * 109.46911 * 65.29450 * 18 8 7 20 20 C 1.52999 * 109.47177 * 185.29446 * 18 8 7 21 21 H 1.09005 * 109.47159 * 60.00059 * 1 2 3 22 22 H 1.09004 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47187 * 300.00149 * 1 2 3 24 24 H 1.09003 * 109.47187 * 239.99851 * 2 1 3 25 25 H 1.08997 * 109.47464 * 120.00030 * 2 1 3 26 26 H 1.08002 * 125.90012 * 179.74607 * 5 4 3 27 27 H 1.08004 * 126.03915 * 180.02562 * 6 5 4 28 28 H 0.97001 * 119.99812 * 356.87575 * 13 12 10 29 29 H 1.08996 * 109.47094 * 305.29754 * 18 8 7 30 30 H 1.09000 * 109.47468 * 60.00266 * 19 18 8 31 31 H 1.09001 * 109.47272 * 180.02562 * 19 18 8 32 32 H 1.09004 * 109.47544 * 299.99853 * 19 18 8 33 33 H 1.08997 * 109.46928 * 65.76527 * 20 18 8 34 34 H 1.09000 * 109.46882 * 185.76193 * 20 18 8 35 35 H 1.09001 * 109.46611 * 305.76582 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2902 2.1592 -1.1328 5 6 2.7111 3.3315 -0.7321 6 6 2.7160 3.3392 0.6666 7 6 2.2830 2.1297 1.0912 8 6 2.1298 1.6942 2.5258 9 1 1.3844 0.9013 2.5872 10 6 3.4510 1.1825 3.0392 11 1 4.3049 1.8423 3.0843 12 6 3.5697 -0.1278 3.4514 13 7 2.5744 -0.9676 3.2679 14 14 5.1443 -0.7105 4.2702 15 1 5.0195 -2.1493 4.6156 16 1 6.2855 -0.5225 3.3388 17 1 5.3799 0.0773 5.5069 18 6 1.6792 2.8846 3.3749 19 6 0.2789 3.3207 2.9392 20 6 1.6509 2.4777 4.8495 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.0047 4.1513 -1.3710 27 1 3.0126 4.1650 1.2964 28 1 1.7403 -0.6546 2.8840 29 1 2.3759 3.7119 3.2395 30 1 -0.4179 2.4935 3.0746 31 1 -0.0420 4.1691 3.5437 32 1 0.2990 3.6107 1.8886 33 1 2.6652 2.2652 5.1872 34 1 1.2333 3.2911 5.4429 35 1 1.0341 1.5869 4.9687 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:27 Heat of formation + Delta-G solvation = 35.573396 kcal Electronic energy + Delta-G solvation = -16061.300329 eV Core-core repulsion = 13673.615319 eV Total energy + Delta-G solvation = -2387.685009 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.05219 -37.84015 -35.36468 -34.31979 -31.54371 -30.12454 -28.48046 -27.52441 -25.20449 -24.58087 -22.24109 -20.96011 -20.20737 -18.75099 -17.64940 -16.23462 -15.80085 -15.67229 -15.19339 -15.18550 -14.73418 -14.40382 -14.16973 -13.76819 -13.32314 -13.23440 -12.95244 -12.87416 -12.63962 -12.25438 -12.22300 -11.99769 -11.92653 -11.75522 -11.31963 -11.10376 -10.84948 -10.51199 -9.90519 -9.20950 -8.54613 -6.25571 1.21125 1.55212 1.59530 1.78682 1.79533 2.12855 2.56900 3.20175 3.72011 4.01166 4.09124 4.19760 4.27280 4.34703 4.37549 4.52064 4.66174 4.73160 4.82092 4.88162 4.95317 4.99761 5.04287 5.09380 5.15844 5.23633 5.36401 5.52574 5.68656 5.69078 5.98408 6.05859 6.22467 6.33852 6.69990 7.00568 7.46277 8.81070 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.012272 C = 0.010644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.357431 B = 2281.065264 C = 2629.892591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.118 3.882 3 N -0.381 5.381 4 N -0.352 5.352 5 C 0.043 3.957 6 C -0.316 4.316 7 C 0.130 3.870 8 C 0.082 3.918 9 H 0.036 0.964 10 C -0.581 4.581 11 H 0.040 0.960 12 C -0.012 4.012 13 N -0.929 5.929 14 Si 1.100 2.900 15 H -0.285 1.285 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.076 4.076 19 C -0.137 4.137 20 C -0.118 4.118 21 H 0.062 0.938 22 H 0.096 0.904 23 H 0.046 0.954 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.209 0.791 27 H 0.144 0.856 28 H 0.262 0.738 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 5.267 -1.747 6.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.004 4.004 3 N -0.163 5.163 4 N -0.173 5.173 5 C -0.142 4.142 6 C -0.345 4.345 7 C 0.002 3.998 8 C 0.061 3.939 9 H 0.054 0.946 10 C -0.620 4.620 11 H 0.058 0.942 12 C -0.212 4.212 13 N -0.568 5.568 14 Si 0.924 3.076 15 H -0.210 1.210 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.095 4.095 19 C -0.194 4.194 20 C -0.175 4.175 21 H 0.081 0.919 22 H 0.114 0.886 23 H 0.066 0.934 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.226 0.774 27 H 0.162 0.838 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.725 3.042 -2.152 4.616 hybrid contribution -0.392 1.631 -0.085 1.680 sum -3.117 4.673 -2.237 6.046 Atomic orbital electron populations 1.22034 0.92965 1.03892 1.01941 1.21775 0.96354 0.78221 1.04012 1.48704 1.52017 1.12110 1.03436 1.77073 1.25485 1.05208 1.09507 1.24202 0.98757 0.95972 0.95255 1.21221 1.18733 0.99474 0.95064 1.22262 0.94483 0.91214 0.91862 1.17883 0.96881 0.94746 0.84357 0.94622 1.21898 0.96385 0.98749 1.44944 0.94155 1.26845 1.05442 0.93443 0.95472 1.71008 1.05171 1.36835 1.43790 0.83116 0.72003 0.75964 0.76503 1.21023 1.20999 1.19344 1.21059 0.96005 0.97053 0.95402 1.21812 0.96289 1.00670 1.00644 1.21518 1.01060 0.99514 0.95396 0.91859 0.88556 0.93434 0.89200 0.89775 0.77431 0.83850 0.92457 0.92267 0.94123 0.91262 0.93855 0.93551 0.91904 0.95245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.24 71.98 0.74 -4.18 16 2 C 0.12 4.70 6.75 86.38 0.58 5.28 16 3 N -0.38 -16.74 3.61 -334.71 -1.21 -17.95 16 4 N -0.35 -14.78 12.58 -57.02 -0.72 -15.50 16 5 C 0.04 1.61 12.03 85.24 1.03 2.63 16 6 C -0.32 -12.88 9.45 21.99 0.21 -12.67 16 7 C 0.13 5.86 4.99 41.41 0.21 6.07 16 8 C 0.08 3.81 1.67 -12.28 -0.02 3.79 16 9 H 0.04 1.79 5.11 -2.39 -0.01 1.78 16 10 C -0.58 -30.21 6.88 25.60 0.18 -30.03 16 11 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 12 C -0.01 -0.64 5.45 84.66 0.46 -0.18 16 13 N -0.93 -51.17 13.20 21.45 0.28 -50.89 16 14 Si 1.10 48.17 29.91 68.60 2.05 50.22 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 C -0.08 -3.00 2.21 -10.79 -0.02 -3.03 16 19 C -0.14 -4.67 9.00 71.98 0.65 -4.02 16 20 C -0.12 -4.52 8.74 71.98 0.63 -3.89 16 21 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 22 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 25 H 0.08 3.83 5.82 -2.39 -0.01 3.82 16 26 H 0.21 5.72 8.06 -2.91 -0.02 5.70 16 27 H 0.14 5.38 7.23 -2.91 -0.02 5.36 16 28 H 0.26 14.29 5.04 -92.71 -0.47 13.82 16 29 H 0.06 2.33 7.01 -2.39 -0.02 2.31 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.52 6.99 -2.38 -0.02 1.50 16 33 H 0.05 1.93 7.30 -2.39 -0.02 1.91 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -59.94 283.55 6.39 -53.55 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 1.35 Total: 20.79 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 4.63 Total: -40.22 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.64 Total: -84.34 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.22 kcal Total: -59.94 6.39 -53.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.120 kcal (2) G-P(sol) polarization free energy of solvation -59.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds