Wall clock time and date at job start Mon Mar 30 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47406 * 2 1 4 4 N 1.40083 * 126.03949 * 270.02811 * 3 2 1 5 5 C 1.30836 * 108.20838 * 179.97438 * 4 3 2 6 6 C 1.39880 * 108.20040 * 359.77714 * 5 4 3 7 7 C 1.34951 * 126.03499 * 89.99646 * 3 2 1 8 8 C 1.50698 * 126.12575 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47644 * 24.99367 * 8 7 3 10 10 C 1.50702 * 109.46796 * 264.99474 * 8 7 3 11 11 H 1.08004 * 119.99851 * 304.92808 * 10 8 7 12 12 C 1.37876 * 119.99867 * 124.92999 * 10 8 7 13 13 N 1.31506 * 120.00144 * 354.99907 * 12 10 8 14 14 Si 1.86798 * 119.99814 * 174.71731 * 12 10 8 15 15 H 1.48501 * 109.47320 * 60.00057 * 14 12 10 16 16 H 1.48497 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47470 * 300.00281 * 14 12 10 18 18 C 1.52997 * 109.47013 * 144.99923 * 8 7 3 19 19 C 1.53001 * 109.47292 * 176.44670 * 18 8 7 20 20 C 1.53003 * 109.47136 * 296.44517 * 18 8 7 21 21 H 1.09000 * 109.46712 * 299.99882 * 1 2 3 22 22 H 1.09001 * 109.46851 * 59.99826 * 1 2 3 23 23 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47106 * 239.99816 * 2 1 3 25 25 H 1.08994 * 109.47124 * 120.00412 * 2 1 3 26 26 H 1.07994 * 125.90116 * 180.02562 * 5 4 3 27 27 H 1.07994 * 126.04056 * 180.23977 * 6 5 4 28 28 H 0.97004 * 120.00590 * 180.02562 * 13 12 10 29 29 H 1.08996 * 109.47811 * 56.44441 * 18 8 7 30 30 H 1.09003 * 109.47004 * 54.62720 * 19 18 8 31 31 H 1.08997 * 109.47197 * 174.62818 * 19 18 8 32 32 H 1.09002 * 109.47035 * 294.63053 * 19 18 8 33 33 H 1.09001 * 109.47085 * 300.00375 * 20 18 8 34 34 H 1.08997 * 109.47112 * 59.99953 * 20 18 8 35 35 H 1.09002 * 109.47226 * 180.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1584 -1.1327 5 6 2.7075 3.3328 -0.7321 6 6 2.7060 3.3429 0.6667 7 6 2.2830 2.1297 1.0913 8 6 2.1285 1.6946 2.5258 9 1 2.2048 0.6091 2.5866 10 6 0.7821 2.1333 3.0414 11 1 0.4944 3.1727 2.9843 12 6 -0.0824 1.2076 3.5861 13 7 0.2254 -0.0708 3.5667 14 14 -1.6875 1.7701 4.3586 15 1 -2.5085 2.4714 3.3392 16 1 -2.4317 0.5905 4.8683 17 1 -1.3980 2.6958 5.4832 18 6 3.2314 2.3317 3.3735 19 6 3.0229 1.9617 4.8434 20 6 4.5947 1.8174 2.9067 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.9970 4.1539 -1.3709 27 1 2.9936 4.1717 1.2964 28 1 -0.3829 -0.7221 3.9496 29 1 3.1947 3.4154 3.2629 30 1 2.9644 0.8776 4.9404 31 1 3.8595 2.3348 5.4342 32 1 2.0962 2.4092 5.2027 33 1 4.6316 0.7336 3.0173 34 1 4.7433 2.0809 1.8595 35 1 5.3805 2.2709 3.5109 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261215579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:30 Heat of formation + Delta-G solvation = 50.759918 kcal Electronic energy + Delta-G solvation = -16047.484093 eV Core-core repulsion = 13660.457620 eV Total energy + Delta-G solvation = -2387.026472 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.28697 -35.85385 -33.59076 -32.28419 -29.83013 -28.38586 -26.98668 -25.84142 -23.30796 -22.85667 -20.47852 -19.21923 -18.06369 -16.47689 -15.98100 -14.63868 -14.16478 -13.96415 -13.57186 -13.16486 -12.91371 -12.55317 -12.27461 -11.88312 -11.69394 -11.40186 -11.35329 -11.19633 -10.95508 -10.72991 -10.44457 -10.34010 -10.12729 -9.93769 -9.55994 -9.38713 -9.08316 -8.60101 -8.20185 -7.43149 -6.16805 -4.17665 2.96661 3.24529 3.29123 3.33737 3.50380 3.84066 4.34409 5.14266 5.38979 5.79823 5.82175 5.85418 5.99055 6.02497 6.05991 6.22649 6.31933 6.40932 6.52073 6.60474 6.68404 6.75221 6.79966 6.94475 7.02716 7.03465 7.18502 7.33000 7.49349 7.63169 7.68313 7.77909 8.06389 8.27889 8.72786 8.91232 9.43722 10.90194 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.013405 C = 0.010273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.908432 B = 2088.246672 C = 2724.998172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 N -0.369 5.369 4 N -0.337 5.337 5 C 0.035 3.965 6 C -0.314 4.314 7 C 0.155 3.845 8 C 0.085 3.915 9 H 0.080 0.920 10 C -0.498 4.498 11 H 0.056 0.944 12 C 0.074 3.926 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.077 4.077 19 C -0.122 4.122 20 C -0.147 4.147 21 H 0.086 0.914 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.165 0.835 27 H 0.131 0.869 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 0.856 -1.908 4.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 N -0.151 5.151 4 N -0.159 5.159 5 C -0.150 4.150 6 C -0.343 4.343 7 C 0.027 3.973 8 C 0.065 3.935 9 H 0.098 0.902 10 C -0.536 4.536 11 H 0.074 0.926 12 C -0.129 4.129 13 N -0.525 5.525 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.096 4.096 19 C -0.179 4.179 20 C -0.204 4.204 21 H 0.105 0.895 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.183 0.817 27 H 0.149 0.851 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.176 -0.230 -2.887 4.299 hybrid contribution -0.837 0.877 1.025 1.588 sum 2.339 0.647 -1.862 3.059 Atomic orbital electron populations 1.22090 0.94674 1.01922 1.03386 1.21417 0.95444 0.78356 1.02771 1.48537 1.51360 1.11767 1.03388 1.77090 1.24548 1.04736 1.09490 1.23531 1.00529 0.95632 0.95347 1.20989 1.20002 0.99355 0.93997 1.22272 0.91818 0.91018 0.92222 1.17942 0.94154 0.99139 0.82264 0.90191 1.20831 0.99450 0.94443 1.38925 0.92566 1.24871 0.97709 0.94870 0.95442 1.69833 1.37152 1.00368 1.45105 0.86730 0.83604 0.78246 0.79985 1.20278 1.21238 1.20000 1.21119 0.93430 0.99329 0.95759 1.21557 0.99842 1.01253 0.95251 1.21930 0.97682 1.00356 1.00464 0.89485 0.93590 0.92022 0.91023 0.88546 0.81748 0.85092 0.92609 0.92736 0.93219 0.95636 0.92028 0.93696 0.93267 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.24 37.16 0.38 -2.76 16 2 C 0.14 2.77 6.96 -4.04 -0.03 2.74 16 3 N -0.37 -8.06 3.61 -57.14 -0.21 -8.27 16 4 N -0.34 -7.28 12.58 30.63 0.39 -6.89 16 5 C 0.03 0.68 12.03 -17.36 -0.21 0.47 16 6 C -0.31 -6.57 9.34 -40.01 -0.37 -6.94 16 7 C 0.16 3.47 4.96 -82.26 -0.41 3.06 16 8 C 0.09 1.95 1.89 -92.93 -0.18 1.77 16 9 H 0.08 1.99 5.73 -51.93 -0.30 1.69 16 10 C -0.50 -12.44 6.96 -34.44 -0.24 -12.68 16 11 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 12 C 0.07 1.84 5.01 -17.82 -0.09 1.75 16 13 N -0.89 -22.39 12.62 55.43 0.70 -21.69 16 14 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.08 -1.56 2.19 -90.62 -0.20 -1.76 16 19 C -0.12 -2.43 8.78 37.16 0.33 -2.10 16 20 C -0.15 -2.67 8.97 37.16 0.33 -2.34 16 21 H 0.09 1.98 7.69 -51.93 -0.40 1.58 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.10 1.94 6.98 -51.93 -0.36 1.57 16 26 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 27 H 0.13 2.56 7.28 -52.49 -0.38 2.17 16 28 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.05 1.11 7.10 -51.93 -0.37 0.74 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.31 7.33 -51.93 -0.38 0.93 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.91 6.84 -51.93 -0.36 0.56 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -1.00 -26.45 287.09 -5.97 -32.42 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.47 Total: 3.84 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.68 Total: -18.79 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.88 Total: -36.85 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.45 -5.97 -32.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.179 kcal (2) G-P(sol) polarization free energy of solvation -26.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds