Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 C 1.52997 * 109.47341 * 120.00261 * 2 1 3 5 5 N 1.46506 * 109.47289 * 64.99653 * 4 2 1 6 6 N 1.40083 * 126.03473 * 90.02305 * 5 4 2 7 7 C 1.30844 * 108.20275 * 180.02562 * 6 5 4 8 8 C 1.39868 * 108.20204 * 0.02562 * 7 6 5 9 9 C 1.34946 * 126.03646 * 269.72197 * 5 4 2 10 10 C 1.50698 * 126.12666 * 359.97438 * 9 5 4 11 11 H 1.09004 * 109.47087 * 25.01082 * 10 9 5 12 12 C 1.52999 * 109.47411 * 265.00497 * 10 9 5 13 13 C 1.50701 * 109.46723 * 145.00313 * 10 9 5 14 14 H 1.07999 * 120.00446 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99807 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00302 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99966 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47398 * 119.99791 * 17 15 13 20 20 H 1.48506 * 109.47358 * 239.99742 * 17 15 13 21 21 H 1.09004 * 109.47031 * 59.99400 * 1 2 3 22 22 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46596 * 300.00151 * 1 2 3 24 24 H 1.09002 * 109.46818 * 240.00299 * 2 1 3 25 25 H 1.08993 * 109.47331 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46933 * 300.00305 * 3 2 1 27 27 H 1.09002 * 109.46801 * 60.00288 * 3 2 1 28 28 H 1.09001 * 109.47289 * 304.99525 * 4 2 1 29 29 H 1.09004 * 109.47261 * 184.99781 * 4 2 1 30 30 H 1.07996 * 125.89590 * 180.02562 * 7 6 5 31 31 H 1.07999 * 126.03494 * 179.97438 * 8 7 6 32 32 H 1.08991 * 109.47127 * 60.00000 * 12 10 9 33 33 H 1.08997 * 109.47027 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.47179 * 299.99938 * 12 10 9 35 35 H 0.96996 * 119.99991 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 7 2.4025 -3.1705 0.6221 7 6 1.7303 -4.2844 0.7611 8 6 0.5322 -3.9922 1.4210 9 6 0.5124 -2.6641 1.6795 10 6 -0.5878 -1.9122 2.3831 11 1 -0.5715 -0.8679 2.0710 12 6 -0.3760 -1.9957 3.8961 13 6 -1.9195 -2.5217 2.0279 14 1 -1.9646 -3.3691 1.3599 15 6 -3.0804 -1.9976 2.5558 16 7 -3.0256 -0.9660 3.3698 17 14 -4.7310 -2.7535 2.1161 18 1 -4.5216 -3.8952 1.1898 19 1 -5.4002 -3.2342 3.3516 20 1 -5.5836 -1.7318 1.4569 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6055 -0.2618 2.1370 29 1 3.1264 -0.6444 1.2951 30 1 2.0461 -5.2608 0.4245 31 1 -0.2386 -4.7021 1.6826 32 1 0.5871 -1.5549 4.1530 33 1 -1.1721 -1.4522 4.4050 34 1 -0.3925 -3.0399 4.2082 35 1 -3.8422 -0.5975 3.7414 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = 54.237306 kcal Electronic energy + Delta-G solvation = -15808.722981 eV Core-core repulsion = 13421.847299 eV Total energy + Delta-G solvation = -2386.875681 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47813 -36.08597 -34.39429 -31.41803 -30.83638 -27.79802 -26.84878 -25.72007 -25.15876 -21.84524 -20.77986 -19.70980 -18.50871 -16.11061 -16.00504 -14.84264 -14.59817 -14.49068 -13.68556 -13.17120 -12.87696 -12.69332 -12.36777 -12.07412 -11.90027 -11.53780 -11.49326 -11.01793 -10.96295 -10.73532 -10.62847 -10.50396 -10.41406 -10.23380 -9.95824 -9.52584 -8.95548 -8.47920 -8.29648 -7.52602 -6.07742 -4.12319 2.78864 3.27015 3.28256 3.35855 3.41254 3.75962 4.39927 4.98371 5.08458 5.24460 5.31414 5.43157 5.69514 5.77181 5.84259 5.95634 6.03084 6.14459 6.19681 6.36286 6.43989 6.58985 6.68737 6.76302 6.88462 6.99430 7.05711 7.14098 7.53298 7.61577 7.79108 7.87369 8.05783 8.31601 8.61050 8.90134 9.52324 10.99090 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.010277 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.522506 B = 2723.873829 C = 3251.434110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.141 3.859 5 N -0.378 5.378 6 N -0.332 5.332 7 C 0.035 3.965 8 C -0.286 4.286 9 C 0.140 3.860 10 C 0.088 3.912 11 H 0.051 0.949 12 C -0.132 4.132 13 C -0.502 4.502 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.140 0.860 32 H 0.005 0.995 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 1.864 -3.434 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.130 4.130 3 C -0.201 4.201 4 C 0.019 3.981 5 N -0.161 5.161 6 N -0.153 5.153 7 C -0.151 4.151 8 C -0.315 4.315 9 C 0.013 3.987 10 C 0.068 3.932 11 H 0.069 0.931 12 C -0.190 4.190 13 C -0.541 4.541 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.186 0.814 31 H 0.158 0.842 32 H 0.024 0.976 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.732 2.643 -3.778 9.003 hybrid contribution -1.669 -0.846 0.095 1.874 sum 6.063 1.798 -3.683 7.318 Atomic orbital electron populations 1.22046 0.93368 1.03871 1.01666 1.21514 0.97715 0.95832 0.97966 1.21771 1.00492 0.95537 1.02256 1.21627 1.00528 0.76731 0.99225 1.48524 1.15184 1.06510 1.45832 1.77100 1.20425 0.95192 1.22599 1.23650 0.94542 0.96898 0.99963 1.21147 1.01004 0.95879 1.13451 1.22137 0.88025 0.94300 0.94252 1.17827 0.88640 0.95580 0.91171 0.93128 1.21781 0.98807 1.00154 0.98261 1.21111 0.89411 1.15509 1.28033 0.91814 1.24918 0.99080 0.94928 0.94944 1.69874 1.27919 1.23527 1.31675 0.86498 0.83772 0.79298 0.78283 1.19633 1.21018 1.21082 0.93390 0.90810 0.91566 0.91047 0.92860 0.92352 0.92250 0.89117 0.89997 0.81400 0.84209 0.97601 0.89111 0.94903 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 7.63 37.16 0.28 -2.41 16 2 C -0.11 -1.71 3.13 -90.62 -0.28 -1.99 16 3 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 4 C 0.14 2.36 5.56 -4.04 -0.02 2.34 16 5 N -0.38 -7.66 3.43 -57.14 -0.20 -7.85 16 6 N -0.33 -6.76 12.58 30.62 0.39 -6.38 16 7 C 0.03 0.67 12.03 -17.36 -0.21 0.46 16 8 C -0.29 -6.12 9.70 -40.01 -0.39 -6.51 16 9 C 0.14 3.10 4.61 -82.26 -0.38 2.72 16 10 C 0.09 2.09 1.60 -92.92 -0.15 1.95 16 11 H 0.05 1.24 4.48 -51.93 -0.23 1.00 16 12 C -0.13 -3.10 8.95 37.16 0.33 -2.77 16 13 C -0.50 -13.09 8.25 -34.44 -0.28 -13.38 16 14 H 0.06 1.69 6.81 -52.49 -0.36 1.33 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.06 11.32 55.43 0.63 -23.43 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 1.55 5.94 -51.93 -0.31 1.24 16 23 H 0.07 1.23 6.88 -51.93 -0.36 0.87 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.52 7.53 -51.93 -0.39 1.12 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 31 H 0.14 2.95 7.63 -52.49 -0.40 2.55 16 32 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -28.08 280.99 -6.12 -34.21 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.30 Total: 2.99 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.85 Total: -19.42 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.82 Total: -37.66 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.08 -6.12 -34.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.443 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds