Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 C 1.52997 * 109.47341 * 120.00261 * 2 1 3 5 5 N 1.46506 * 109.47289 * 64.99653 * 4 2 1 6 6 N 1.40083 * 126.03473 * 90.02305 * 5 4 2 7 7 C 1.30844 * 108.20275 * 180.02562 * 6 5 4 8 8 C 1.39868 * 108.20204 * 0.02562 * 7 6 5 9 9 C 1.34946 * 126.03646 * 269.72197 * 5 4 2 10 10 C 1.50698 * 126.12666 * 359.97438 * 9 5 4 11 11 H 1.09004 * 109.47087 * 25.01082 * 10 9 5 12 12 C 1.52999 * 109.47411 * 265.00497 * 10 9 5 13 13 C 1.50701 * 109.46723 * 145.00313 * 10 9 5 14 14 H 1.07999 * 120.00446 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99807 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00302 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99966 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47398 * 119.99791 * 17 15 13 20 20 H 1.48506 * 109.47358 * 239.99742 * 17 15 13 21 21 H 1.09004 * 109.47031 * 59.99400 * 1 2 3 22 22 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46596 * 300.00151 * 1 2 3 24 24 H 1.09002 * 109.46818 * 240.00299 * 2 1 3 25 25 H 1.08993 * 109.47331 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46933 * 300.00305 * 3 2 1 27 27 H 1.09002 * 109.46801 * 60.00288 * 3 2 1 28 28 H 1.09001 * 109.47289 * 304.99525 * 4 2 1 29 29 H 1.09004 * 109.47261 * 184.99781 * 4 2 1 30 30 H 1.07996 * 125.89590 * 180.02562 * 7 6 5 31 31 H 1.07999 * 126.03494 * 179.97438 * 8 7 6 32 32 H 1.08991 * 109.47127 * 60.00000 * 12 10 9 33 33 H 1.08997 * 109.47027 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.47179 * 299.99938 * 12 10 9 35 35 H 0.96996 * 119.99991 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 7 2.4025 -3.1705 0.6221 7 6 1.7303 -4.2844 0.7611 8 6 0.5322 -3.9922 1.4210 9 6 0.5124 -2.6641 1.6795 10 6 -0.5878 -1.9122 2.3831 11 1 -0.5715 -0.8679 2.0710 12 6 -0.3760 -1.9957 3.8961 13 6 -1.9195 -2.5217 2.0279 14 1 -1.9646 -3.3691 1.3599 15 6 -3.0804 -1.9976 2.5558 16 7 -3.0256 -0.9660 3.3698 17 14 -4.7310 -2.7535 2.1161 18 1 -4.5216 -3.8952 1.1898 19 1 -5.4002 -3.2342 3.3516 20 1 -5.5836 -1.7318 1.4569 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6055 -0.2618 2.1370 29 1 3.1264 -0.6444 1.2951 30 1 2.0461 -5.2608 0.4245 31 1 -0.2386 -4.7021 1.6826 32 1 0.5871 -1.5549 4.1530 33 1 -1.1721 -1.4522 4.4050 34 1 -0.3925 -3.0399 4.2082 35 1 -3.8422 -0.5975 3.7414 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = 39.231463 kcal Electronic energy + Delta-G solvation = -15809.373683 eV Core-core repulsion = 13421.847299 eV Total energy + Delta-G solvation = -2387.526384 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.06078 -37.40901 -36.28312 -33.18813 -32.43471 -29.52445 -28.12552 -27.18061 -27.05964 -23.67774 -22.19597 -21.19639 -20.08860 -18.03793 -17.71538 -16.42518 -16.25382 -15.89887 -15.15344 -14.89165 -14.35745 -14.27707 -13.80389 -13.71177 -13.41092 -13.11332 -12.87233 -12.82043 -12.74423 -12.41952 -12.19468 -12.08321 -11.86589 -11.82235 -11.65982 -11.25668 -10.90023 -10.44560 -9.89729 -9.17882 -8.09517 -6.19318 1.17862 1.42184 1.45951 1.55958 1.81473 2.14208 2.46738 3.21105 3.66750 3.84023 4.06355 4.12781 4.22894 4.43757 4.55281 4.67978 4.73906 4.78993 4.89591 4.94002 5.02491 5.05502 5.13382 5.15580 5.18927 5.38323 5.39882 5.46683 5.64768 5.88761 5.97739 6.00422 6.23810 6.46845 6.85175 7.01503 7.47481 8.96517 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.010277 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.522506 B = 2723.873829 C = 3251.434110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.136 4.136 4 C 0.132 3.868 5 N -0.379 5.379 6 N -0.339 5.339 7 C 0.042 3.958 8 C -0.303 4.303 9 C 0.122 3.878 10 C 0.093 3.907 11 H 0.042 0.958 12 C -0.123 4.123 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.022 3.978 16 N -0.913 5.913 17 Si 0.949 3.051 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 H 0.062 0.938 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.135 0.865 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 1.955 -4.184 8.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.193 4.193 4 C 0.011 3.989 5 N -0.161 5.161 6 N -0.160 5.160 7 C -0.143 4.143 8 C -0.332 4.332 9 C -0.006 4.006 10 C 0.073 3.927 11 H 0.060 0.940 12 C -0.181 4.181 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.177 4.177 16 N -0.552 5.552 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.225 0.775 31 H 0.153 0.847 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.657 2.747 -4.530 10.149 hybrid contribution -1.928 -0.879 0.314 2.142 sum 6.729 1.869 -4.216 8.158 Atomic orbital electron populations 1.21933 0.95372 1.01322 1.01611 1.21442 0.95743 0.97915 0.96955 1.21730 1.01748 0.92897 1.02970 1.21939 1.01955 0.75223 0.99804 1.48753 1.14483 1.07628 1.45246 1.77069 1.20709 0.95563 1.22697 1.24188 0.93215 0.98195 0.98685 1.21303 1.01994 0.95707 1.14170 1.21896 0.88606 0.94743 0.95325 1.17632 0.88628 0.95137 0.91340 0.94046 1.21639 0.98905 0.99471 0.98086 1.21302 0.90822 1.15285 1.27814 0.92826 1.25546 1.01857 0.95367 0.94980 1.69968 1.28615 1.24336 1.32300 0.85638 0.80289 0.78542 0.78014 1.19534 1.20653 1.20784 0.91915 0.94519 0.93051 0.91592 0.90821 0.91219 0.92007 0.89458 0.87704 0.77502 0.84721 0.95913 0.91117 0.95494 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 7.63 71.98 0.55 -4.57 16 2 C -0.10 -2.96 3.13 -10.79 -0.03 -3.00 16 3 C -0.14 -2.92 9.19 71.98 0.66 -2.26 16 4 C 0.13 4.23 5.56 86.38 0.48 4.71 16 5 N -0.38 -15.00 3.43 -334.68 -1.15 -16.15 16 6 N -0.34 -13.21 12.58 -57.02 -0.72 -13.93 16 7 C 0.04 1.54 12.03 85.23 1.02 2.57 16 8 C -0.30 -12.83 9.70 21.99 0.21 -12.62 16 9 C 0.12 5.40 4.61 41.41 0.19 5.60 16 10 C 0.09 4.48 1.60 -12.29 -0.02 4.46 16 11 H 0.04 2.08 4.48 -2.39 -0.01 2.06 16 12 C -0.12 -5.83 8.95 71.98 0.64 -5.18 16 13 C -0.51 -27.22 8.25 25.60 0.21 -27.01 16 14 H 0.05 2.89 6.81 -2.91 -0.02 2.87 16 15 C 0.02 1.14 5.30 84.66 0.45 1.59 16 16 N -0.91 -49.80 11.32 21.45 0.24 -49.56 16 17 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.04 1.55 5.94 -2.39 -0.01 1.54 16 23 H 0.05 1.93 6.88 -2.38 -0.02 1.92 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 2.85 7.53 -2.39 -0.02 2.83 16 29 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.21 5.64 8.06 -2.91 -0.02 5.61 16 31 H 0.13 5.73 7.63 -2.91 -0.02 5.71 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -59.36 280.99 5.83 -53.53 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.06 Total: 17.20 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 4.37 Total: -35.71 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.62 Total: -79.64 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -59.36 5.83 -53.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.766 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds