Wall clock time and date at job start Mon Mar 30 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46834 * 2 1 4 4 C 1.50694 * 109.46968 * 120.00195 * 2 1 3 5 5 N 1.30837 * 125.89861 * 299.97280 * 4 2 1 6 6 N 1.40088 * 108.20852 * 180.02562 * 5 4 2 7 7 C 1.46499 * 126.03866 * 180.02562 * 6 5 4 8 8 C 1.34952 * 107.91997 * 359.75513 * 6 5 4 9 9 C 1.35309 * 107.74907 * 0.39508 * 8 6 5 10 10 C 1.50696 * 126.04430 * 179.87517 * 9 8 6 11 11 C 1.52998 * 109.46969 * 264.68778 * 10 9 8 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47050 * 59.99579 * 16 14 12 18 18 H 1.48496 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46492 * 299.99554 * 16 14 12 20 20 H 1.08999 * 109.47242 * 59.99966 * 1 2 3 21 21 H 1.09001 * 109.47220 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47462 * 299.99907 * 1 2 3 23 23 H 1.08994 * 109.46729 * 240.00236 * 2 1 3 24 24 H 1.09001 * 109.46830 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47234 * 300.00039 * 3 2 1 26 26 H 1.08995 * 109.46791 * 60.00336 * 3 2 1 27 27 H 1.08998 * 109.47184 * 89.97483 * 7 6 5 28 28 H 1.09001 * 109.46581 * 209.97124 * 7 6 5 29 29 H 1.08994 * 109.47327 * 329.96644 * 7 6 5 30 30 H 1.08000 * 126.12483 * 180.23639 * 8 6 5 31 31 H 1.09000 * 109.47664 * 144.68706 * 10 9 8 32 32 H 1.09002 * 109.46824 * 24.68177 * 10 9 8 33 33 H 1.09001 * 109.47671 * 59.99812 * 11 10 9 34 34 H 1.08998 * 109.47454 * 299.99809 * 11 10 9 35 35 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7888 -0.3653 2.4687 6 7 2.4346 -1.2780 3.3126 7 6 2.4198 -1.2570 4.7774 8 6 3.0679 -2.1835 2.5379 9 6 2.8399 -1.8524 1.2459 10 6 3.3587 -2.5878 0.0372 11 6 4.6493 -1.9247 -0.4480 12 6 5.1686 -2.6605 -1.6564 13 1 4.6319 -3.5157 -2.0396 14 6 6.3259 -2.2387 -2.2757 15 7 6.9765 -1.1940 -1.8122 16 14 6.9692 -3.1503 -3.7740 17 1 5.9498 -3.1103 -4.8530 18 1 8.2180 -2.5024 -4.2492 19 1 7.2507 -4.5624 -3.4109 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9562 0.8900 27 1 1.5770 -1.8450 5.1407 28 1 3.3494 -1.6819 5.1562 29 1 2.3222 -0.2286 5.1251 30 1 3.6540 -3.0209 2.8867 31 1 2.6124 -2.5543 -0.7565 32 1 3.5608 -3.6255 0.3024 33 1 5.3957 -1.9582 0.3457 34 1 4.4473 -0.8870 -0.7131 35 1 7.7906 -0.8969 -2.2481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261221028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:37 Heat of formation + Delta-G solvation = 47.531987 kcal Electronic energy + Delta-G solvation = -15120.149697 eV Core-core repulsion = 12732.983251 eV Total energy + Delta-G solvation = -2387.166446 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80903 -35.49463 -33.90022 -32.24618 -31.19738 -28.63797 -26.77341 -26.47972 -24.34495 -22.15336 -21.18886 -19.60613 -18.39843 -16.44125 -15.94448 -15.09896 -14.43572 -14.39420 -14.12441 -13.19372 -13.11745 -13.06654 -12.44322 -12.32690 -12.14142 -11.89772 -11.77514 -11.07731 -10.91039 -10.85027 -10.79544 -10.59633 -10.56023 -10.02865 -9.60339 -9.52270 -8.99897 -8.73690 -8.26927 -7.62004 -5.92341 -3.94856 2.34180 2.90903 3.33949 3.37322 3.41690 3.44523 4.51772 4.76827 5.12192 5.23309 5.23578 5.40839 5.42918 5.45661 5.57325 5.78348 5.96443 5.98078 6.09772 6.17394 6.27953 6.33657 6.44661 6.66482 6.71629 6.82255 6.88643 7.11164 7.30091 7.51654 7.79173 7.95670 8.10679 8.22543 8.50888 9.12998 9.68660 11.18582 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.007158 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.496436 B = 3910.826239 C = 4413.849643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.016 4.016 3 C -0.139 4.139 4 C 0.088 3.912 5 N -0.303 5.303 6 N -0.389 5.389 7 C 0.110 3.890 8 C 0.037 3.963 9 C -0.203 4.203 10 C -0.040 4.040 11 C 0.031 3.969 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.017 0.983 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.066 0.731 8.854 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 C -0.197 4.197 4 C -0.078 4.078 5 N -0.126 5.126 6 N -0.173 5.173 7 C -0.032 4.032 8 C -0.107 4.107 9 C -0.214 4.214 10 C -0.079 4.079 11 C -0.006 4.006 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.185 0.815 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.479 1.657 9.787 14.434 hybrid contribution 1.043 -1.122 -1.110 1.892 sum -9.436 0.535 8.677 12.830 Atomic orbital electron populations 1.21788 0.94650 1.01598 1.01574 1.19599 0.95110 0.95692 0.93230 1.21767 1.01924 0.94758 1.01256 1.22101 0.97407 0.95364 0.92945 1.77100 1.20491 1.14276 1.00697 1.48204 1.40998 1.22190 1.05873 1.21669 1.02581 1.03795 0.75167 1.22235 1.00510 0.96701 0.91215 1.20478 1.05498 1.00088 0.95296 1.20111 0.98997 0.97252 0.91515 1.19048 0.90348 0.95854 0.95338 1.21273 1.08298 1.13735 1.12536 0.92747 1.25010 0.96903 0.95100 0.97359 1.69969 1.17671 1.24994 1.40852 0.86703 0.78199 0.79954 0.83400 1.20243 1.21390 1.20321 0.92424 0.92908 0.92622 0.88655 0.92056 0.92485 0.92795 0.91586 0.89984 0.89926 0.81544 0.92617 0.92943 0.96951 0.96488 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.18 37.16 0.34 -1.59 16 2 C -0.02 -0.27 3.30 -91.77 -0.30 -0.57 16 3 C -0.14 -2.22 9.18 37.16 0.34 -1.88 16 4 C 0.09 1.67 5.73 -82.41 -0.47 1.19 16 5 N -0.30 -5.58 12.58 33.67 0.42 -5.16 16 6 N -0.39 -6.31 4.01 -68.17 -0.27 -6.58 16 7 C 0.11 1.17 11.47 59.85 0.69 1.85 16 8 C 0.04 0.64 11.40 -17.22 -0.20 0.44 16 9 C -0.20 -3.99 5.35 -105.06 -0.56 -4.56 16 10 C -0.04 -0.86 5.20 -27.89 -0.15 -1.01 16 11 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 12 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.10 1.71 7.03 -51.93 -0.37 1.34 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.17 2.38 8.06 -52.49 -0.42 1.95 16 31 H 0.06 1.16 7.46 -51.93 -0.39 0.77 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -32.68 297.37 -6.30 -38.99 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.79 Total: -2.96 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.86 Total: -18.99 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.89 Total: -38.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.68 -6.30 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.520 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds