Wall clock time and date at job start Mon Mar 30 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.41754 * 127.77079 * 2 1 4 4 C 1.29263 * 112.81704 * 155.44926 * 3 2 1 5 5 C 1.48951 * 107.60688 * 0.22122 * 4 3 2 6 6 H 1.08999 * 109.53966 * 267.47770 * 5 4 3 7 7 C 1.51106 * 120.28135 * 139.27971 * 5 4 3 8 8 C 1.54219 * 106.20956 * 179.31456 * 7 5 4 9 9 H 1.08994 * 108.94550 * 296.66848 * 8 7 5 10 10 C 1.53001 * 109.01002 * 177.84105 * 8 7 5 11 11 C 1.50691 * 109.47420 * 172.66501 * 10 8 7 12 12 H 1.08006 * 120.00512 * 0.02562 * 11 10 8 13 13 C 1.37884 * 120.00134 * 180.02562 * 11 10 8 14 14 N 1.31511 * 119.99814 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99803 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46666 * 90.00226 * 15 13 11 17 17 H 1.48503 * 109.46790 * 210.00072 * 15 13 11 18 18 H 1.48497 * 109.47267 * 330.00123 * 15 13 11 19 19 C 1.52486 * 111.84411 * 57.23367 * 8 7 5 20 20 C 1.53992 * 112.13082 * 306.84864 * 19 8 7 21 21 C 1.45425 * 127.77361 * 179.97438 * 2 1 3 22 22 H 1.09008 * 109.88157 * 100.23802 * 21 2 1 23 23 H 1.09006 * 109.47408 * 0.02574 * 1 2 3 24 24 H 1.09003 * 109.46981 * 120.02275 * 1 2 3 25 25 H 1.08999 * 109.47281 * 240.02302 * 1 2 3 26 26 H 1.08000 * 126.19175 * 180.21858 * 4 3 2 27 27 H 1.08998 * 110.10096 * 60.14512 * 7 5 4 28 28 H 1.08998 * 110.10104 * 298.49120 * 7 5 4 29 29 H 1.08997 * 109.46958 * 292.66965 * 10 8 7 30 30 H 1.09003 * 109.46595 * 52.66490 * 10 8 7 31 31 H 0.97002 * 119.99535 * 180.02562 * 14 13 11 32 32 H 1.09000 * 108.94828 * 67.53437 * 19 8 7 33 33 H 1.09000 * 108.95029 * 186.16868 * 19 8 7 34 34 H 1.09001 * 109.99314 * 175.84784 * 20 19 8 35 35 H 1.08998 * 109.99969 * 297.23349 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3333 1.1205 0.0000 4 6 3.4970 0.8529 0.4951 5 6 3.4987 -0.5829 0.8914 6 1 3.2036 -0.6729 1.9368 7 6 4.7138 -1.4431 0.6332 8 6 4.3732 -2.8445 1.1795 9 1 4.2203 -2.7769 2.2565 10 6 5.5463 -3.7865 0.9013 11 6 5.3036 -5.1068 1.5860 12 1 4.4025 -5.2591 2.1616 13 6 6.2318 -6.1206 1.4775 14 7 6.0197 -7.2730 2.0746 15 14 7.7900 -5.8576 0.4813 16 1 8.8546 -5.3135 1.3620 17 1 8.2356 -7.1530 -0.0918 18 1 7.5183 -4.8971 -0.6182 19 6 3.1147 -3.4146 0.5341 20 6 1.9207 -2.4477 0.6377 21 6 2.3558 -1.1495 0.0005 22 1 2.7269 -1.3314 -1.0082 23 1 -0.3634 1.0277 -0.0005 24 1 -0.3633 -0.5142 -0.8898 25 1 -0.3634 -0.5135 0.8902 26 1 4.3191 1.5451 0.6019 27 1 5.5787 -1.0368 1.1575 28 1 4.9143 -1.4968 -0.4369 29 1 5.6375 -3.9457 -0.1731 30 1 6.4663 -3.3433 1.2824 31 1 6.6730 -7.9860 1.9986 32 1 3.3167 -3.6163 -0.5178 33 1 2.8561 -4.3507 1.0290 34 1 1.0629 -2.8561 0.1033 35 1 1.6649 -2.2819 1.6842 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:13 Heat of formation + Delta-G solvation = 33.347049 kcal Electronic energy + Delta-G solvation = -15441.541147 eV Core-core repulsion = 13053.759596 eV Total energy + Delta-G solvation = -2387.781551 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56018 -37.84605 -34.87524 -33.89293 -32.46775 -30.89887 -28.67218 -26.88367 -24.15586 -23.74443 -21.50461 -20.90818 -20.66457 -18.87072 -16.98081 -16.78317 -16.36720 -15.73067 -15.16959 -14.92990 -14.76205 -14.56618 -14.22687 -13.83423 -13.48366 -13.24635 -12.92639 -12.84873 -12.57970 -12.50704 -12.11895 -11.82308 -11.76533 -11.60218 -11.19164 -11.04220 -10.87397 -10.73630 -10.66132 -8.58584 -8.24296 -6.26494 1.28070 1.38198 1.40062 1.51525 1.92604 2.39733 3.11548 3.43356 3.68041 3.79864 4.04687 4.17983 4.27374 4.31473 4.46858 4.49662 4.54693 4.66861 4.71967 4.82888 4.87440 4.99633 5.03836 5.16638 5.18650 5.25538 5.27502 5.44335 5.57402 5.68875 5.74283 5.77814 6.35758 6.53623 6.81474 7.04169 7.37480 8.92382 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.051367 B = 0.006640 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.964498 B = 4215.871824 C = 4571.672466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.149 3.851 2 N -0.586 5.586 3 N -0.270 5.270 4 C 0.059 3.941 5 C -0.109 4.109 6 H 0.081 0.919 7 C -0.084 4.084 8 C -0.069 4.069 9 H 0.050 0.950 10 C -0.008 4.008 11 C -0.519 4.519 12 H 0.034 0.966 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.289 1.289 18 H -0.245 1.245 19 C -0.095 4.095 20 C -0.098 4.098 21 C 0.123 3.877 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.224 0.776 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.017 0.983 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 15.782 -4.682 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.405 5.405 3 N -0.071 5.071 4 C -0.156 4.156 5 C -0.131 4.131 6 H 0.099 0.901 7 C -0.123 4.123 8 C -0.088 4.088 9 H 0.068 0.932 10 C -0.046 4.046 11 C -0.557 4.557 12 H 0.053 0.947 13 C -0.195 4.195 14 N -0.597 5.597 15 Si 0.770 3.230 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.169 1.169 19 C -0.134 4.134 20 C -0.137 4.137 21 C 0.017 3.983 22 H 0.067 0.933 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.240 0.760 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.751 16.312 -5.121 18.381 hybrid contribution 0.996 -1.512 0.233 1.825 sum -5.756 14.800 -4.888 16.615 Atomic orbital electron populations 1.21185 0.74417 1.02776 1.00813 1.50802 1.03480 0.99804 1.86435 1.75621 1.03441 1.15259 1.12743 1.27136 0.97418 0.96820 0.94249 1.21653 0.97357 0.93315 1.00754 0.90068 1.21282 0.96590 0.92916 1.01504 1.21072 0.94732 0.93983 0.98983 0.93165 1.19618 0.95325 0.93552 0.96057 1.21512 1.05405 0.98060 1.30758 0.94738 1.26002 1.02089 0.94705 0.96708 1.70078 1.37716 1.05429 1.46438 0.85709 0.79376 0.77818 0.80055 1.19196 1.21537 1.16886 1.21385 0.93815 0.97702 1.00474 1.21322 0.98196 0.93529 1.00603 1.21708 0.90187 0.88865 0.97536 0.93280 0.90199 0.92533 0.92770 0.76001 0.89670 0.91450 0.96440 0.96101 0.92778 0.92900 0.93414 0.90899 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.09 11.46 127.77 1.46 4.56 16 2 N -0.59 -15.82 4.23 -517.54 -2.19 -18.01 16 3 N -0.27 -7.29 12.22 -51.27 -0.63 -7.91 16 4 C 0.06 1.31 12.02 87.95 1.06 2.36 16 5 C -0.11 -2.82 2.41 -11.80 -0.03 -2.85 16 6 H 0.08 2.23 7.68 -2.39 -0.02 2.22 16 7 C -0.08 -2.35 5.15 30.39 0.16 -2.20 16 8 C -0.07 -2.52 2.07 -10.55 -0.02 -2.54 16 9 H 0.05 1.94 8.11 -2.39 -0.02 1.92 16 10 C -0.01 -0.37 3.48 29.85 0.10 -0.26 16 11 C -0.52 -29.20 9.00 25.60 0.23 -28.97 16 12 H 0.03 2.14 7.26 -2.91 -0.02 2.12 16 13 C 0.00 0.05 5.47 84.66 0.46 0.52 16 14 N -0.96 -59.90 13.96 21.45 0.30 -59.60 16 15 Si 0.95 43.89 27.47 68.60 1.88 45.77 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 19 C -0.10 -3.38 4.81 30.76 0.15 -3.23 16 20 C -0.10 -2.80 5.73 30.28 0.17 -2.63 16 21 C 0.12 3.44 3.04 45.44 0.14 3.57 16 22 H 0.05 1.49 7.85 -2.38 -0.02 1.48 16 23 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 29 H 0.02 0.78 7.17 -2.39 -0.02 0.76 16 30 H 0.02 0.90 7.56 -2.39 -0.02 0.88 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.05 1.97 7.03 -2.39 -0.02 1.95 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.86 7.89 -2.39 -0.02 1.84 16 Total: -1.00 -67.18 276.93 4.24 -62.94 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.99 Total: 8.47 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 3.88 Total: -31.66 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.52 Total: -85.53 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -67.18 4.24 -62.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.292 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds