Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47368 * 300.00641 * 3 2 1 6 6 H 1.48499 * 109.46936 * 60.00591 * 3 2 1 7 7 C 1.39938 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00200 * 197.52410 * 7 2 1 9 9 C 1.41041 * 119.99749 * 17.52295 * 7 2 1 10 10 C 1.40701 * 120.04254 * 25.28010 * 9 7 2 11 11 C 1.37799 * 119.56081 * 180.02562 * 10 9 7 12 12 O 1.35240 * 133.81184 * 179.97438 * 11 10 9 13 13 C 1.34174 * 108.08199 * 180.02562 * 12 11 10 14 14 N 1.30146 * 110.36415 * 0.23016 * 13 12 11 15 15 C 1.35622 * 108.92730 * 359.62554 * 14 13 12 16 16 C 1.40176 * 133.48781 * 180.10275 * 15 14 13 17 17 C 1.36045 * 120.15915 * 180.30608 * 16 15 14 18 18 Cl 1.73596 * 119.85537 * 179.97438 * 17 16 15 19 19 H 0.96998 * 119.99962 * 4.48491 * 1 2 3 20 20 H 1.08002 * 120.22198 * 0.08040 * 10 9 7 21 21 H 1.07999 * 124.82136 * 179.97438 * 13 12 11 22 22 H 1.08000 * 119.91699 * 0.28993 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3966 -1.2124 6 1 1.8838 2.3963 1.2126 7 6 2.0083 -1.2119 -0.0005 8 1 3.0506 -1.2337 0.2811 9 6 1.3522 -2.4048 -0.3688 10 6 0.2284 -2.3586 -1.2143 11 6 -0.4053 -3.5301 -1.5674 12 8 -1.4777 -3.8186 -2.3393 13 6 -1.6509 -5.1491 -2.3310 14 7 -0.7460 -5.7190 -1.5893 15 6 0.0727 -4.7640 -1.0823 16 6 1.1931 -4.8012 -0.2408 17 6 1.8225 -3.6475 0.1108 18 17 3.2090 -3.7027 1.1539 19 1 -0.4850 0.8375 -0.0657 20 1 -0.1345 -1.4112 -1.5848 21 1 -2.4329 -5.6725 -2.8610 22 1 1.5574 -5.7481 0.1295 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227818.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = -3.315439 kcal Electronic energy + Delta-G solvation = -12531.752625 eV Core-core repulsion = 10077.872489 eV Total energy + Delta-G solvation = -2453.880137 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.63806 -38.95564 -36.90403 -35.92960 -34.75959 -31.25591 -30.90244 -27.28836 -24.31121 -23.23066 -22.37416 -19.71723 -18.38588 -18.20093 -17.23207 -16.92110 -16.13362 -15.19094 -14.70531 -14.62607 -14.16090 -13.98645 -13.22766 -12.93687 -12.68439 -12.41512 -12.27576 -12.00834 -11.68335 -11.54990 -11.15849 -11.01616 -9.38175 -9.28952 -8.83339 -6.51562 0.19700 0.61953 1.37806 1.41496 1.49452 1.56992 1.86215 2.14315 2.18708 2.55734 3.33808 3.54452 3.95456 4.46894 4.59559 4.76233 5.01528 5.08049 5.34571 5.43865 5.62892 5.78683 5.86135 6.25523 6.55727 6.61595 7.00621 8.11308 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.011642 C = 0.008414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.668117 B = 2404.564168 C = 3326.942690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.445 4.445 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.197 4.197 11 C 0.036 3.964 12 O -0.245 6.245 13 C 0.177 3.823 14 N -0.494 5.494 15 C -0.117 4.117 16 C -0.032 4.032 17 C -0.114 4.114 18 Cl -0.075 7.075 19 H 0.298 0.702 20 H 0.120 0.880 21 H 0.298 0.702 22 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -0.819 -1.729 1.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.472 4.472 8 H 0.119 0.881 9 C 0.107 3.893 10 C -0.218 4.218 11 C -0.014 4.014 12 O -0.139 6.139 13 C -0.053 4.053 14 N -0.223 5.223 15 C -0.228 4.228 16 C -0.052 4.052 17 C -0.143 4.143 18 Cl -0.047 7.047 19 H 0.109 0.891 20 H 0.137 0.863 21 H 0.313 0.687 22 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.469 -1.318 -1.416 1.991 hybrid contribution 0.019 1.168 -0.038 1.169 sum 0.488 -0.150 -1.454 1.541 Atomic orbital electron populations 1.69866 1.09362 1.32021 1.30962 1.26936 0.95443 1.05050 0.90822 0.85080 0.79764 0.75418 0.79230 1.17432 1.18555 1.18843 1.20015 0.98888 0.91223 1.37040 0.88130 1.17394 0.90690 0.92087 0.89166 1.19710 1.01852 0.93792 1.06432 1.20521 0.88496 0.97461 0.94904 1.84426 1.42150 1.28366 1.58941 1.28903 1.00380 0.77068 0.98990 1.70083 1.05984 1.33580 1.12620 1.19309 1.03346 0.88931 1.11260 1.19470 0.92702 0.97255 0.95754 1.20493 0.95811 0.94518 1.03464 1.98226 1.41753 1.98673 1.65998 0.89070 0.86257 0.68736 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.73 10.97 21.83 0.24 -38.49 14 2 C 0.04 1.68 5.13 85.25 0.44 2.12 14 3 Si 0.99 34.57 29.60 68.60 2.03 36.61 14 4 H -0.25 -8.59 7.11 99.48 0.71 -7.88 14 5 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 6 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 7 C -0.45 -21.86 8.49 23.37 0.20 -21.66 14 8 H 0.10 4.71 7.08 -2.91 -0.02 4.69 14 9 C 0.11 5.69 5.57 -21.25 -0.12 5.57 14 10 C -0.20 -10.32 8.68 22.77 0.20 -10.12 14 11 C 0.04 1.78 7.40 22.83 0.17 1.95 14 12 O -0.25 -10.59 10.78 -10.73 -0.12 -10.71 14 13 C 0.18 6.16 13.12 130.49 1.71 7.87 14 14 N -0.49 -20.94 11.32 -307.57 -3.48 -24.42 14 15 C -0.12 -5.64 7.25 39.69 0.29 -5.35 14 16 C -0.03 -1.48 9.78 22.23 0.22 -1.26 14 17 C -0.11 -5.42 6.32 22.50 0.14 -5.28 14 18 Cl -0.08 -3.05 27.52 -2.72 -0.07 -3.13 14 19 H 0.30 12.86 8.30 -92.71 -0.77 12.09 14 20 H 0.12 6.44 6.19 -2.91 -0.02 6.42 14 21 H 0.30 5.72 8.06 -2.91 -0.02 5.70 14 22 H 0.13 5.46 8.06 -2.91 -0.02 5.44 14 Total: -1.00 -59.28 220.96 3.11 -56.17 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.27 Total: 10.14 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.24 Total: -26.17 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -3.24 Total: -62.91 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.12 Total: -10.71 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.13 kcal Total: -59.28 3.11 -56.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227818.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.852 kcal (2) G-P(sol) polarization free energy of solvation -59.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds