Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47365 * 2 1 4 4 C 1.53004 * 109.46904 * 120.00462 * 2 1 3 5 5 N 1.46502 * 109.46888 * 175.06413 * 4 2 1 6 6 C 1.35045 * 126.39519 * 98.40308 * 5 4 2 7 7 N 1.30500 * 108.70194 * 180.26864 * 6 5 4 8 8 C 1.34135 * 109.25176 * 359.76806 * 7 6 5 9 9 C 1.34673 * 108.02164 * 359.97438 * 8 7 6 10 10 C 1.50692 * 126.59286 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47366 * 204.26916 * 10 9 8 12 12 C 1.53005 * 109.47012 * 84.26971 * 10 9 8 13 13 C 1.50703 * 109.47372 * 324.27070 * 10 9 8 14 14 H 1.08008 * 119.99776 * 0.02562 * 13 10 9 15 15 C 1.37868 * 120.00366 * 179.71856 * 13 10 9 16 16 N 1.31515 * 120.00056 * 0.28456 * 15 13 10 17 17 Si 1.86804 * 120.00386 * 180.27191 * 15 13 10 18 18 H 1.48501 * 109.46880 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46799 * 120.00218 * 17 15 13 20 20 H 1.48489 * 109.47509 * 240.00699 * 17 15 13 21 21 H 1.09003 * 109.47235 * 299.99875 * 1 2 3 22 22 H 1.09003 * 109.47305 * 59.99748 * 1 2 3 23 23 H 1.09004 * 109.47602 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46856 * 239.99748 * 2 1 3 25 25 H 1.09001 * 109.47356 * 185.29755 * 3 2 1 26 26 H 1.09004 * 109.47261 * 305.29037 * 3 2 1 27 27 H 1.08995 * 109.47459 * 65.29273 * 3 2 1 28 28 H 1.08999 * 109.47732 * 55.06235 * 4 2 1 29 29 H 1.08996 * 109.46528 * 295.05909 * 4 2 1 30 30 H 1.08002 * 125.65433 * 0.06619 * 6 5 4 31 31 H 1.07997 * 125.99050 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.46709 * 303.60339 * 12 10 9 33 33 H 1.08999 * 109.47180 * 63.60277 * 12 10 9 34 34 H 1.09002 * 109.46880 * 183.60772 * 12 10 9 35 35 H 0.96995 * 120.00221 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5001 -0.8251 1.1913 6 6 4.3862 -0.0141 1.8084 7 7 5.5935 -0.4153 1.5179 8 6 5.5221 -1.4891 0.7171 9 6 4.2210 -1.7639 0.5038 10 6 3.6657 -2.8850 -0.3361 11 1 2.6631 -2.6234 -0.6743 12 6 3.6044 -4.1657 0.4989 13 6 4.5569 -3.1066 -1.5310 14 1 5.4378 -2.4968 -1.6682 15 6 4.2515 -4.0919 -2.4456 16 7 3.1792 -4.8348 -2.2784 17 14 5.3603 -4.3717 -3.9227 18 1 6.4926 -3.4118 -3.8804 19 1 5.8872 -5.7597 -3.8903 20 1 4.5832 -4.1661 -5.1712 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1259 1.4439 -0.0949 26 1 1.6014 1.9829 -0.8388 27 1 1.7562 1.9282 0.9335 28 1 1.6062 -1.7203 1.2946 29 1 1.7506 -0.1590 2.1369 30 1 4.1371 0.8290 2.4357 31 1 6.3608 -2.0376 0.3146 32 1 4.5963 -4.3921 0.8901 33 1 2.9100 -4.0263 1.3275 34 1 3.2633 -4.9909 -0.1262 35 1 2.9640 -5.5278 -2.9221 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 36.115988 kcal Electronic energy + Delta-G solvation = -15662.789643 eV Core-core repulsion = 13275.128162 eV Total energy + Delta-G solvation = -2387.661481 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31934 -36.30292 -34.39954 -32.00161 -30.96206 -27.34610 -27.05821 -25.97088 -25.13867 -21.92500 -20.54607 -20.28892 -18.63934 -16.49093 -16.03132 -15.03620 -14.78688 -14.48928 -13.89132 -13.30496 -12.93843 -12.83790 -12.53194 -12.24399 -12.09135 -11.86093 -11.54682 -11.14205 -10.95953 -10.91588 -10.84358 -10.63565 -10.40674 -10.19639 -9.90966 -9.27274 -8.86946 -8.71710 -8.39291 -7.30472 -6.05723 -4.10917 2.95036 3.28680 3.36934 3.42057 3.52211 4.05348 4.41945 4.84720 4.94726 5.13328 5.26781 5.34498 5.38210 5.60797 5.67131 5.77755 5.83769 5.89869 6.00077 6.17706 6.36696 6.40953 6.48565 6.66621 6.81461 6.92253 7.13199 7.15265 7.65089 7.68809 7.85829 7.98996 8.09702 8.35380 8.90930 8.93941 9.54218 11.00796 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.009551 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.657783 B = 2931.046060 C = 3368.767271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.461 5.461 6 C 0.140 3.860 7 N -0.501 5.501 8 C -0.048 4.048 9 C 0.038 3.962 10 C 0.110 3.890 11 H 0.032 0.968 12 C -0.131 4.131 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.188 0.812 31 H 0.163 0.837 32 H 0.030 0.970 33 H 0.004 0.996 34 H 0.090 0.910 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 7.732 5.261 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.202 4.202 4 C -0.008 4.008 5 N -0.145 5.145 6 C -0.141 4.141 7 N -0.220 5.220 8 C -0.194 4.194 9 C -0.076 4.076 10 C 0.090 3.910 11 H 0.050 0.950 12 C -0.189 4.189 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.204 0.796 31 H 0.180 0.820 32 H 0.049 0.951 33 H 0.023 0.977 34 H 0.108 0.892 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.100 7.977 5.476 10.938 hybrid contribution -0.237 -0.517 -1.060 1.203 sum -5.338 7.460 4.416 10.181 Atomic orbital electron populations 1.21752 0.94378 1.02187 1.01675 1.21510 0.95995 0.96863 0.99084 1.21816 1.01754 0.95395 1.01205 1.21799 0.78079 1.02291 0.98645 1.45394 1.06632 1.24248 1.38225 1.24460 0.84796 1.00157 1.04654 1.70135 1.22153 1.13352 1.16372 1.21892 0.95767 0.98025 1.03669 1.22369 0.92181 0.94555 0.98490 1.17353 0.96358 0.86378 0.90907 0.95037 1.21781 0.98170 1.01655 0.97288 1.21146 1.09842 1.17298 1.05813 0.91888 1.24931 0.95317 0.95705 0.98029 1.69878 1.25490 1.21569 1.36181 0.86485 0.80794 0.78100 0.82411 1.19581 1.20976 1.21100 0.92872 0.92277 0.92190 0.89357 0.92282 0.92669 0.93089 0.89448 0.89906 0.79559 0.82010 0.95073 0.97715 0.89157 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.12 -1.62 3.13 -90.62 -0.28 -1.90 16 3 C -0.14 -1.85 8.85 37.15 0.33 -1.52 16 4 C 0.12 1.68 5.08 -4.04 -0.02 1.66 16 5 N -0.46 -8.47 2.44 -113.99 -0.28 -8.75 16 6 C 0.14 2.51 11.63 -90.37 -1.05 1.46 16 7 N -0.50 -10.67 11.25 -14.66 -0.16 -10.83 16 8 C -0.05 -1.09 10.79 -17.81 -0.19 -1.28 16 9 C 0.04 0.86 5.86 -81.61 -0.48 0.38 16 10 C 0.11 2.68 2.51 -92.92 -0.23 2.45 16 11 H 0.03 0.81 7.27 -51.93 -0.38 0.43 16 12 C -0.13 -3.13 9.00 37.16 0.33 -2.79 16 13 C -0.50 -13.47 8.27 -34.44 -0.28 -13.75 16 14 H 0.06 1.71 6.89 -52.48 -0.36 1.35 16 15 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 16 N -0.89 -24.61 11.29 55.43 0.63 -23.98 16 17 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 1.56 7.60 -51.93 -0.39 1.17 16 25 H 0.06 0.89 7.25 -51.93 -0.38 0.51 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 29 H 0.08 0.96 8.12 -51.93 -0.42 0.53 16 30 H 0.19 2.55 8.06 -52.49 -0.42 2.13 16 31 H 0.16 3.69 7.71 -52.49 -0.40 3.28 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.09 2.34 5.97 -51.93 -0.31 2.03 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -29.21 287.70 -7.72 -36.93 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.58 Total: 1.30 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.63 Total: -15.02 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.18 Total: -43.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.21 -7.72 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.043 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds