Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47365 * 2 1 4 4 C 1.53004 * 109.46904 * 120.00462 * 2 1 3 5 5 N 1.46502 * 109.46888 * 175.06413 * 4 2 1 6 6 C 1.35045 * 126.39519 * 98.40308 * 5 4 2 7 7 N 1.30500 * 108.70194 * 180.26864 * 6 5 4 8 8 C 1.34135 * 109.25176 * 359.76806 * 7 6 5 9 9 C 1.34673 * 108.02164 * 359.97438 * 8 7 6 10 10 C 1.50692 * 126.59286 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47366 * 204.26916 * 10 9 8 12 12 C 1.53005 * 109.47012 * 84.26971 * 10 9 8 13 13 C 1.50703 * 109.47372 * 324.27070 * 10 9 8 14 14 H 1.08008 * 119.99776 * 0.02562 * 13 10 9 15 15 C 1.37868 * 120.00366 * 179.71856 * 13 10 9 16 16 N 1.31515 * 120.00056 * 0.28456 * 15 13 10 17 17 Si 1.86804 * 120.00386 * 180.27191 * 15 13 10 18 18 H 1.48501 * 109.46880 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46799 * 120.00218 * 17 15 13 20 20 H 1.48489 * 109.47509 * 240.00699 * 17 15 13 21 21 H 1.09003 * 109.47235 * 299.99875 * 1 2 3 22 22 H 1.09003 * 109.47305 * 59.99748 * 1 2 3 23 23 H 1.09004 * 109.47602 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46856 * 239.99748 * 2 1 3 25 25 H 1.09001 * 109.47356 * 185.29755 * 3 2 1 26 26 H 1.09004 * 109.47261 * 305.29037 * 3 2 1 27 27 H 1.08995 * 109.47459 * 65.29273 * 3 2 1 28 28 H 1.08999 * 109.47732 * 55.06235 * 4 2 1 29 29 H 1.08996 * 109.46528 * 295.05909 * 4 2 1 30 30 H 1.08002 * 125.65433 * 0.06619 * 6 5 4 31 31 H 1.07997 * 125.99050 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.46709 * 303.60339 * 12 10 9 33 33 H 1.08999 * 109.47180 * 63.60277 * 12 10 9 34 34 H 1.09002 * 109.46880 * 183.60772 * 12 10 9 35 35 H 0.96995 * 120.00221 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5001 -0.8251 1.1913 6 6 4.3862 -0.0141 1.8084 7 7 5.5935 -0.4153 1.5179 8 6 5.5221 -1.4891 0.7171 9 6 4.2210 -1.7639 0.5038 10 6 3.6657 -2.8850 -0.3361 11 1 2.6631 -2.6234 -0.6743 12 6 3.6044 -4.1657 0.4989 13 6 4.5569 -3.1066 -1.5310 14 1 5.4378 -2.4968 -1.6682 15 6 4.2515 -4.0919 -2.4456 16 7 3.1792 -4.8348 -2.2784 17 14 5.3603 -4.3717 -3.9227 18 1 6.4926 -3.4118 -3.8804 19 1 5.8872 -5.7597 -3.8903 20 1 4.5832 -4.1661 -5.1712 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1259 1.4439 -0.0949 26 1 1.6014 1.9829 -0.8388 27 1 1.7562 1.9282 0.9335 28 1 1.6062 -1.7203 1.2946 29 1 1.7506 -0.1590 2.1369 30 1 4.1371 0.8290 2.4357 31 1 6.3608 -2.0376 0.3146 32 1 4.5963 -4.3921 0.8901 33 1 2.9100 -4.0263 1.3275 34 1 3.2633 -4.9909 -0.1262 35 1 2.9640 -5.5278 -2.9221 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 21.233607 kcal Electronic energy + Delta-G solvation = -15663.434991 eV Core-core repulsion = 13275.128162 eV Total energy + Delta-G solvation = -2388.306829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.87269 -37.47690 -36.36603 -33.46834 -32.86511 -29.03332 -28.06882 -27.24537 -27.15797 -23.75515 -22.09763 -21.50821 -20.22225 -18.17126 -17.88929 -16.54827 -16.34882 -15.93375 -15.33911 -14.78110 -14.57316 -14.31117 -14.18079 -13.54848 -13.47144 -13.14273 -12.91667 -12.86240 -12.81201 -12.40011 -12.29109 -12.18963 -11.97497 -11.77427 -11.64738 -11.13136 -10.69573 -10.44038 -10.21069 -8.98975 -8.13011 -6.24485 1.37426 1.40097 1.43621 1.54422 2.10633 2.39189 2.45730 3.16544 3.74535 3.86437 3.97474 4.03072 4.27119 4.32891 4.53621 4.64241 4.71284 4.77832 4.81157 4.95433 4.96905 5.01243 5.10518 5.19636 5.22528 5.33031 5.40824 5.47100 5.60903 5.86039 5.94895 6.06756 6.34105 6.61785 6.81639 7.32918 7.44059 8.92636 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.009551 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.657783 B = 2931.046060 C = 3368.767271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.138 4.138 4 C 0.109 3.891 5 N -0.457 5.457 6 C 0.168 3.832 7 N -0.532 5.532 8 C -0.065 4.065 9 C 0.017 3.983 10 C 0.117 3.883 11 H 0.012 0.988 12 C -0.119 4.119 13 C -0.520 4.520 14 H 0.051 0.949 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.279 1.279 21 H 0.083 0.917 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.239 0.761 31 H 0.146 0.854 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.607 9.395 6.397 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.195 4.195 4 C -0.013 4.013 5 N -0.140 5.140 6 C -0.113 4.113 7 N -0.251 5.251 8 C -0.211 4.211 9 C -0.099 4.099 10 C 0.097 3.903 11 H 0.030 0.970 12 C -0.178 4.178 13 C -0.558 4.558 14 H 0.069 0.931 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.205 1.205 21 H 0.102 0.898 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.255 0.745 31 H 0.164 0.836 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.116 9.633 6.608 13.186 hybrid contribution 0.028 -0.963 -1.366 1.672 sum -6.088 8.670 5.242 11.819 Atomic orbital electron populations 1.21709 0.92022 1.02209 1.03395 1.21443 0.97880 0.97149 0.96707 1.21770 0.99883 0.94591 1.03287 1.22150 0.75642 1.02685 1.00803 1.45532 1.08219 1.23084 1.37131 1.25412 0.83627 0.99685 1.02581 1.70116 1.24201 1.13422 1.17354 1.21792 0.95650 0.98975 1.04640 1.21906 0.92513 0.95558 0.99916 1.17093 0.94836 0.87555 0.90790 0.97032 1.21612 0.98123 1.00691 0.97336 1.21365 1.09901 1.17369 1.07165 0.93114 1.25606 0.96535 0.95488 1.00357 1.69974 1.26519 1.21859 1.36981 0.85587 0.79113 0.78000 0.79493 1.19686 1.20341 1.20509 0.89844 0.91838 0.93074 0.94306 0.94941 0.91998 0.89840 0.90559 0.85264 0.74506 0.83596 0.95632 0.95781 0.91362 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 2 C -0.11 -2.99 3.13 -10.80 -0.03 -3.03 16 3 C -0.14 -3.16 8.85 71.98 0.64 -2.52 16 4 C 0.11 2.92 5.08 86.38 0.44 3.36 16 5 N -0.46 -16.10 2.44 -514.56 -1.25 -17.35 16 6 C 0.17 5.57 11.63 180.26 2.10 7.67 16 7 N -0.53 -22.11 11.25 -200.30 -2.25 -24.36 16 8 C -0.07 -3.03 10.79 83.52 0.90 -2.13 16 9 C 0.02 0.75 5.86 40.95 0.24 0.99 16 10 C 0.12 5.90 2.51 -12.29 -0.03 5.87 16 11 H 0.01 0.63 7.27 -2.39 -0.02 0.61 16 12 C -0.12 -5.83 9.00 71.98 0.65 -5.19 16 13 C -0.52 -28.80 8.27 25.60 0.21 -28.59 16 14 H 0.05 2.87 6.89 -2.91 -0.02 2.85 16 15 C 0.02 1.04 5.29 84.65 0.45 1.49 16 16 N -0.91 -51.42 11.29 21.44 0.24 -51.18 16 17 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.04 1.41 7.60 -2.39 -0.02 1.39 16 25 H 0.03 0.91 7.25 -2.39 -0.02 0.89 16 26 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 29 H 0.13 2.30 8.12 -2.39 -0.02 2.29 16 30 H 0.24 5.17 8.06 -2.91 -0.02 5.15 16 31 H 0.15 7.00 7.71 -2.91 -0.02 6.98 16 32 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 3.63 5.97 -2.39 -0.01 3.62 16 35 H 0.26 14.03 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.95 287.70 6.02 -58.93 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.04 Total: 12.23 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 6.22 Total: -24.16 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.27 Total: -92.89 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -64.95 6.02 -58.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.166 kcal (2) G-P(sol) polarization free energy of solvation -64.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds