Wall clock time and date at job start Mon Mar 30 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 6 6 C 1.35040 * 126.40004 * 239.68961 * 5 2 1 7 7 N 1.30497 * 108.70047 * 179.82625 * 6 5 2 8 8 C 1.34129 * 109.25643 * 0.43816 * 7 6 5 9 9 C 1.50694 * 125.99216 * 179.72376 * 8 7 6 10 10 C 1.53004 * 109.47351 * 305.00799 * 9 8 7 11 11 C 1.50694 * 109.47351 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00213 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00393 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00259 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99406 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47458 * 90.00008 * 15 13 11 17 17 H 1.48503 * 109.47014 * 210.00002 * 15 13 11 18 18 H 1.48499 * 109.47451 * 329.99612 * 15 13 11 19 19 C 1.34672 * 108.01878 * 359.73158 * 8 7 6 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 29 29 H 1.08002 * 125.64943 * 359.97438 * 6 5 2 30 30 H 1.08997 * 109.47167 * 65.00408 * 9 8 7 31 31 H 1.08999 * 109.47362 * 185.00756 * 9 8 7 32 32 H 1.08997 * 109.47191 * 299.99897 * 10 9 8 33 33 H 1.08999 * 109.46923 * 59.99687 * 10 9 8 34 34 H 0.96997 * 119.99523 * 180.02562 * 14 13 11 35 35 H 1.08002 * 126.58942 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 2.0184 -0.6907 -1.1961 6 6 2.8027 -1.7896 -1.2228 7 7 3.0254 -2.1147 -2.4668 8 6 2.4054 -1.2381 -3.2708 9 6 2.4181 -1.2560 -4.7776 10 6 3.8649 -1.2554 -5.2755 11 6 3.8776 -1.2727 -6.7823 12 1 2.9468 -1.2835 -7.3302 13 6 5.0774 -1.2758 -7.4617 14 7 5.0884 -1.2914 -8.7767 15 14 6.6871 -1.2578 -6.5142 16 1 7.1196 -2.6530 -6.2465 17 1 7.7259 -0.5629 -7.3164 18 1 6.4958 -0.5431 -5.2267 19 6 1.7697 -0.3391 -2.4954 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 -1.7488 1.2493 27 1 3.1300 -0.7207 1.2495 28 1 1.6766 -0.2073 2.1393 29 1 3.1809 -2.3141 -0.3577 30 1 1.9115 -2.1527 -5.1346 31 1 1.9033 -0.3729 -5.1558 32 1 4.3716 -0.3588 -4.9186 33 1 4.3796 -2.1386 -4.8973 34 1 5.9325 -1.2939 -9.2546 35 1 1.1772 0.4981 -2.8337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261235918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:50 Heat of formation + Delta-G solvation = 20.959291 kcal Electronic energy + Delta-G solvation = -14987.927511 eV Core-core repulsion = 12599.608786 eV Total energy + Delta-G solvation = -2388.318725 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.06140 -38.05421 -35.78203 -33.75624 -31.83399 -30.45035 -28.43296 -28.33381 -26.64846 -23.37238 -22.91024 -20.96173 -20.09358 -18.91639 -17.76733 -16.49760 -16.23691 -15.61114 -15.18509 -14.91424 -14.70435 -14.60711 -14.47661 -14.18856 -13.41031 -13.26472 -13.17588 -12.96795 -12.89676 -12.73330 -12.24889 -11.96151 -11.90494 -11.84947 -11.73433 -11.33005 -10.78491 -10.65250 -10.34798 -9.18004 -8.29591 -6.32009 1.21872 1.33069 1.34510 1.48422 1.92524 2.27704 2.36323 3.05723 3.55552 3.79551 3.81086 3.89546 4.00523 4.37193 4.48490 4.59526 4.61856 4.72327 4.74656 4.79858 4.85117 4.87317 4.99257 5.10665 5.11115 5.15108 5.25370 5.40539 5.50761 5.60871 5.64900 5.93139 6.29204 6.47465 6.74792 7.30769 7.33171 8.87202 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.048319 B = 0.005820 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.347171 B = 4809.928204 C = 4974.115664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C -0.155 4.155 4 C -0.156 4.156 5 N -0.445 5.445 6 C 0.177 3.823 7 N -0.538 5.538 8 C -0.020 4.020 9 C -0.016 4.016 10 C 0.009 3.991 11 C -0.531 4.531 12 H 0.039 0.961 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.949 3.051 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.048 4.048 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.230 0.770 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.267 0.733 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 5.409 25.608 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.063 3.937 3 C -0.213 4.213 4 C -0.213 4.213 5 N -0.129 5.129 6 C -0.105 4.105 7 N -0.258 5.258 8 C -0.148 4.148 9 C -0.054 4.054 10 C -0.029 4.029 11 C -0.569 4.569 12 H 0.057 0.943 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.773 3.227 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.181 4.181 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.120 0.880 23 H 0.121 0.879 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.247 0.753 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.966 4.831 25.345 27.003 hybrid contribution 0.340 0.440 -0.274 0.620 sum -7.626 5.271 25.071 26.730 Atomic orbital electron populations 1.22179 0.91725 1.02986 1.04142 1.21240 0.95954 0.93450 0.83052 1.22202 1.01443 0.93502 1.04134 1.22168 1.02245 1.01381 0.95515 1.45944 1.37815 1.22750 1.06409 1.25385 0.97723 0.90501 0.96904 1.70098 1.24844 1.29029 1.01801 1.20922 1.01847 0.95906 0.96150 1.19625 0.97503 1.00961 0.87309 1.19273 0.94583 0.95521 0.93495 1.21536 0.93393 1.50060 0.91873 0.94290 1.25900 1.03073 0.94172 0.95620 1.70051 1.27798 1.52865 1.08252 0.85681 0.78862 0.79078 0.79111 1.19487 1.20122 1.18379 1.22476 1.08165 1.04013 0.83447 0.92507 0.92354 0.87982 0.87894 0.92918 0.92428 0.91135 0.91464 0.87736 0.75344 0.93167 0.90929 0.97480 0.97487 0.92412 0.79447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.53 71.98 0.61 -1.24 16 2 C 0.15 2.14 1.22 3.60 0.00 2.15 16 3 C -0.16 -2.07 8.53 71.98 0.61 -1.46 16 4 C -0.16 -1.51 7.36 71.98 0.53 -0.98 16 5 N -0.45 -10.92 2.61 -484.95 -1.26 -12.18 16 6 C 0.18 5.08 11.50 180.26 2.07 7.15 16 7 N -0.54 -21.45 11.23 -188.32 -2.12 -23.57 16 8 C -0.02 -0.81 6.36 41.39 0.26 -0.54 16 9 C -0.02 -0.71 5.72 29.85 0.17 -0.54 16 10 C 0.01 0.49 4.01 29.85 0.12 0.61 16 11 C -0.53 -33.14 9.66 25.60 0.25 -32.89 16 12 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 13 C 0.01 0.57 5.47 84.66 0.46 1.03 16 14 N -0.95 -62.20 13.96 21.45 0.30 -61.90 16 15 Si 0.95 48.59 27.47 68.60 1.88 50.48 16 16 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 18 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 19 C -0.05 -1.46 10.49 83.09 0.87 -0.59 16 20 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 21 H 0.06 0.81 7.95 -2.39 -0.02 0.79 16 22 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 23 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.88 7.95 -2.39 -0.02 0.86 16 26 H 0.07 0.69 7.88 -2.39 -0.02 0.67 16 27 H 0.07 0.71 7.86 -2.39 -0.02 0.69 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.23 4.56 7.15 -2.91 -0.02 4.54 16 30 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 3.08 8.11 -2.39 -0.02 3.06 16 32 H 0.01 0.37 7.20 -2.39 -0.02 0.36 16 33 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 34 H 0.27 16.24 8.31 -92.71 -0.77 15.46 16 35 H 0.19 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -78.04 289.74 5.75 -72.29 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 0.98 Total: 2.18 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 5.97 Total: -27.30 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.08 Total: -97.65 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.88 Total: 50.48 kcal Total: -78.04 5.75 -72.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.250 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds