Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47089 * 2 1 4 4 C 1.52999 * 109.47050 * 119.99308 * 2 1 3 5 5 N 1.46501 * 109.46864 * 65.00229 * 4 2 1 6 6 C 1.34953 * 126.03725 * 125.00110 * 5 4 2 7 7 C 1.35312 * 107.74266 * 180.20624 * 6 5 4 8 8 C 1.50703 * 126.03521 * 179.76875 * 7 6 5 9 9 H 1.09004 * 109.47387 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.46927 * 120.00038 * 8 7 6 11 11 C 1.50704 * 109.47130 * 240.00046 * 8 7 6 12 12 H 1.07996 * 120.00027 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00164 * 180.02562 * 11 8 7 14 14 N 1.31518 * 120.00038 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00360 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47121 * 59.99552 * 15 13 11 17 17 H 1.48495 * 109.47577 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47170 * 299.99923 * 15 13 11 19 19 C 1.39863 * 107.92527 * 359.64076 * 7 6 5 20 20 N 1.30837 * 108.19940 * 0.36269 * 19 7 6 21 21 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47418 * 300.00688 * 1 2 3 23 23 H 1.08997 * 109.47181 * 60.00326 * 1 2 3 24 24 H 1.08998 * 109.47494 * 239.99791 * 2 1 3 25 25 H 1.08995 * 109.46803 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.46731 * 299.99549 * 3 2 1 27 27 H 1.08998 * 109.47124 * 59.99564 * 3 2 1 28 28 H 1.08998 * 109.47551 * 305.00592 * 4 2 1 29 29 H 1.09002 * 109.47429 * 185.00087 * 4 2 1 30 30 H 1.08002 * 126.12372 * 359.93597 * 6 5 4 31 31 H 1.08994 * 109.47304 * 60.00318 * 10 8 7 32 32 H 1.09001 * 109.46962 * 180.02562 * 10 8 7 33 33 H 1.08991 * 109.47296 * 299.99546 * 10 8 7 34 34 H 0.97005 * 120.00516 * 180.02562 * 14 13 11 35 35 H 1.08001 * 125.90034 * 180.14354 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4860 -3.1896 1.2872 7 6 1.7405 -4.3138 1.1813 8 6 2.2579 -5.7284 1.2291 9 1 3.3395 -5.7154 1.3642 10 6 1.6073 -6.4702 2.3984 11 6 1.9208 -6.4305 -0.0612 12 1 1.3850 -5.9050 -0.8378 13 6 2.2953 -7.7439 -0.2496 14 7 2.9473 -8.3840 0.6963 15 14 1.8768 -8.6143 -1.8486 16 1 2.5082 -7.8947 -2.9838 17 1 2.3867 -10.0082 -1.8016 18 1 0.4033 -8.6317 -2.0317 19 6 0.4046 -3.9311 1.0227 20 7 0.3510 -2.6239 1.0252 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.1299 1.4425 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6053 -0.2616 2.1370 29 1 3.1263 -0.6442 1.2953 30 1 3.5569 -3.1457 1.4203 31 1 0.5258 -6.4833 2.2638 32 1 1.9818 -7.4933 2.4332 33 1 1.8511 -5.9626 3.3316 34 1 3.2111 -9.3080 0.5637 35 1 -0.4368 -4.5993 0.9132 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = 43.777406 kcal Electronic energy + Delta-G solvation = -15092.190634 eV Core-core repulsion = 12704.861377 eV Total energy + Delta-G solvation = -2387.329257 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.95262 -37.46760 -36.05012 -33.20139 -32.37146 -29.69858 -27.96505 -27.12505 -26.76366 -23.33652 -22.08769 -21.10936 -20.43448 -18.24727 -17.51340 -16.46348 -16.23767 -15.80212 -15.12392 -14.69368 -14.61633 -14.20144 -13.77569 -13.61054 -13.20002 -13.15235 -12.93623 -12.79216 -12.66424 -12.50253 -12.19862 -12.02375 -11.77132 -11.70740 -11.49208 -11.09983 -10.82470 -10.36147 -10.05079 -8.93277 -8.00754 -6.13468 1.13437 1.45231 1.45875 1.53612 1.83959 2.15391 2.51223 3.25787 3.64575 3.83851 4.07055 4.20181 4.28190 4.49141 4.54554 4.71533 4.81329 4.86828 4.91704 5.02011 5.06113 5.12479 5.17543 5.24416 5.36820 5.40250 5.43192 5.55224 5.68775 5.96024 6.05780 6.21109 6.36856 6.51198 6.94859 6.98028 7.53758 9.02748 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.041021 B = 0.006340 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.421576 B = 4415.107954 C = 4664.309514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.133 3.867 5 N -0.374 5.374 6 C 0.029 3.971 7 C -0.209 4.209 8 C 0.110 3.890 9 H 0.004 0.996 10 C -0.118 4.118 11 C -0.514 4.514 12 H 0.045 0.955 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.037 3.963 20 N -0.312 5.312 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.188 0.812 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.260 0.740 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 16.246 0.611 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.123 4.123 3 C -0.194 4.194 4 C 0.013 3.987 5 N -0.158 5.158 6 C -0.116 4.116 7 C -0.220 4.220 8 C 0.090 3.910 9 H 0.022 0.978 10 C -0.176 4.176 11 C -0.553 4.553 12 H 0.063 0.937 13 C -0.184 4.184 14 N -0.558 5.558 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.147 4.147 20 N -0.135 5.135 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.205 0.795 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.277 17.256 0.579 17.312 hybrid contribution 0.338 -1.683 -0.760 1.877 sum -0.938 15.573 -0.181 15.602 Atomic orbital electron populations 1.22029 0.94929 1.03140 1.01283 1.21353 0.96904 0.97466 0.96572 1.21738 1.01647 0.93112 1.02951 1.22109 1.01852 0.74942 0.99817 1.48706 1.04020 1.06560 1.56552 1.22556 0.97935 0.86749 1.04323 1.20639 0.93438 0.96732 1.11145 1.17007 0.93715 0.86486 0.93800 0.97791 1.21576 0.98439 1.01528 0.96021 1.21382 1.35878 0.96722 1.01269 0.93707 1.25653 0.95234 0.98150 0.99332 1.70002 1.40350 1.11343 1.34113 0.85753 0.78596 0.77532 0.80584 1.20160 1.20874 1.19851 1.23739 0.98076 0.92286 1.00621 1.76983 1.00318 1.10731 1.25500 0.91944 0.92519 0.92782 0.92673 0.91281 0.91796 0.91340 0.89225 0.86516 0.79534 0.95462 0.92498 0.96034 0.93082 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 8.92 71.98 0.64 -3.13 16 2 C -0.10 -2.21 3.12 -10.79 -0.03 -2.25 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 4 C 0.13 2.97 5.96 86.38 0.52 3.48 16 5 N -0.37 -12.32 3.68 -348.06 -1.28 -13.60 16 6 C 0.03 1.07 11.34 83.54 0.95 2.02 16 7 C -0.21 -9.19 4.74 -20.15 -0.10 -9.28 16 8 C 0.11 5.61 2.66 -12.28 -0.03 5.58 16 9 H 0.00 0.22 8.11 -2.39 -0.02 0.20 16 10 C -0.12 -5.84 8.86 71.98 0.64 -5.21 16 11 C -0.51 -28.70 8.42 25.60 0.22 -28.48 16 12 H 0.04 2.52 7.73 -2.91 -0.02 2.50 16 13 C 0.01 0.80 5.30 84.65 0.45 1.25 16 14 N -0.92 -53.11 11.32 21.45 0.24 -52.86 16 15 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 C 0.04 1.55 11.52 85.23 0.98 2.54 16 20 N -0.31 -11.86 9.62 -57.03 -0.55 -12.41 16 21 H 0.06 1.93 5.36 -2.39 -0.01 1.92 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.12 1.96 8.07 -2.39 -0.02 1.94 16 30 H 0.19 5.68 8.06 -2.91 -0.02 5.66 16 31 H 0.03 1.29 8.02 -2.39 -0.02 1.27 16 32 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 35 H 0.17 6.99 8.06 -2.91 -0.02 6.97 16 Total: -1.00 -63.58 288.44 6.37 -57.22 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.04 Total: 10.20 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 4.89 Total: -34.78 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -1.59 Total: -78.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.58 6.37 -57.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.993 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds