Wall clock time and date at job start Mon Mar 30 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46810 * 2 1 4 4 C 1.53004 * 109.47311 * 119.99543 * 2 1 3 5 5 N 1.46500 * 109.47120 * 175.00125 * 4 2 1 6 6 C 1.34946 * 126.03375 * 125.00298 * 5 4 2 7 7 C 1.35319 * 107.74069 * 180.02562 * 6 5 4 8 8 C 1.50701 * 126.03809 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.46995 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47433 * 240.00634 * 8 7 6 11 11 C 1.50694 * 109.47169 * 120.00241 * 8 7 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 8 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 C 1.39864 * 107.92049 * 0.26524 * 7 6 5 20 20 N 1.30831 * 108.20560 * 359.55108 * 19 7 6 21 21 H 1.09007 * 109.47477 * 299.99935 * 1 2 3 22 22 H 1.09002 * 109.47753 * 60.00204 * 1 2 3 23 23 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47361 * 239.99780 * 2 1 3 25 25 H 1.08997 * 109.47257 * 60.00308 * 3 2 1 26 26 H 1.09000 * 109.46857 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46858 * 299.99605 * 3 2 1 28 28 H 1.09007 * 109.46530 * 55.00038 * 4 2 1 29 29 H 1.08998 * 109.47160 * 295.00288 * 4 2 1 30 30 H 1.07997 * 126.12635 * 0.04375 * 6 5 4 31 31 H 1.09001 * 109.47411 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46412 * 300.00110 * 10 8 7 33 33 H 1.08993 * 109.47298 * 59.99347 * 10 8 7 34 34 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 35 35 H 1.08001 * 125.89655 * 179.73542 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.3654 -0.3961 2.1325 7 6 5.6170 -0.6773 1.7018 8 6 6.8970 -0.3722 2.4365 9 1 6.6650 0.1165 3.3828 10 6 7.7664 0.5538 1.5835 11 6 7.6411 -1.6551 2.7033 12 1 7.2283 -2.5973 2.3742 13 6 8.8485 -1.6264 3.3684 14 7 9.3509 -0.4791 3.7696 15 14 9.7706 -3.2167 3.6998 16 1 11.0318 -2.9161 4.4236 17 1 8.9264 -4.1152 4.5275 18 1 10.0868 -3.8832 2.4110 19 6 5.5132 -1.2951 0.4513 20 7 4.2444 -1.3905 0.1466 21 1 -0.3634 0.5138 0.8900 22 1 -0.3635 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6053 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 4.1055 0.0860 3.0633 31 1 8.6923 0.7741 2.1147 32 1 7.9982 0.0647 0.6373 33 1 7.2281 1.4817 1.3905 34 1 10.2002 -0.4588 4.2380 35 1 6.3378 -1.6374 -0.1563 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:27 Heat of formation + Delta-G solvation = 55.096686 kcal Electronic energy + Delta-G solvation = -15079.025703 eV Core-core repulsion = 12692.187287 eV Total energy + Delta-G solvation = -2386.838416 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44023 -36.41845 -34.18705 -31.53063 -30.65890 -28.14211 -27.24042 -25.53419 -24.96461 -21.59357 -20.88080 -19.82196 -18.64271 -16.54557 -15.82228 -15.26246 -14.61468 -14.33013 -13.99234 -13.24789 -12.87246 -12.80882 -12.54486 -12.33804 -12.02585 -11.88039 -11.27679 -11.22466 -11.04475 -10.87555 -10.80472 -10.72313 -10.27565 -10.22382 -9.84631 -9.32969 -8.86866 -8.61062 -8.25892 -7.31015 -5.90367 -3.95641 2.65331 3.15342 3.37623 3.41759 3.44992 3.82195 4.52208 4.60361 4.79685 4.97303 5.21384 5.39161 5.40152 5.51653 5.57973 5.64458 5.75077 5.79184 5.91326 5.96804 6.22698 6.27097 6.54379 6.66294 6.87696 7.03103 7.21144 7.39425 7.57767 7.77689 7.85992 8.05317 8.22913 8.49306 8.59602 9.07201 9.68378 11.15126 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.054798 B = 0.006005 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.845989 B = 4661.884816 C = 4862.791990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.146 3.854 5 N -0.385 5.385 6 C 0.017 3.983 7 C -0.172 4.172 8 C 0.106 3.894 9 H 0.028 0.972 10 C -0.129 4.129 11 C -0.500 4.500 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.288 1.288 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.055 3.945 20 N -0.316 5.316 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.082 0.918 32 H 0.025 0.975 33 H 0.005 0.995 34 H 0.259 0.741 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 2.448 -4.691 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.202 4.202 4 C 0.024 3.976 5 N -0.170 5.170 6 C -0.126 4.126 7 C -0.183 4.183 8 C 0.087 3.913 9 H 0.046 0.954 10 C -0.186 4.186 11 C -0.539 4.539 12 H 0.072 0.928 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.214 1.214 17 H -0.205 1.205 18 H -0.203 1.203 19 C -0.131 4.131 20 N -0.138 5.138 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.177 0.823 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.721 2.141 -5.428 15.835 hybrid contribution 1.147 -0.626 0.914 1.595 sum -13.574 1.515 -4.514 14.385 Atomic orbital electron populations 1.21789 0.94554 1.01870 1.02021 1.21413 0.95505 0.97037 0.98842 1.21792 1.01946 0.95176 1.01285 1.21571 0.76163 1.00969 0.98934 1.48290 1.05249 1.48123 1.15338 1.22228 0.90210 1.04264 0.95853 1.20876 0.95899 1.04997 0.96502 1.17199 0.86308 0.95152 0.92656 0.95359 1.21736 1.02045 0.95949 0.98910 1.21126 1.04215 0.92668 1.35867 0.92793 1.24950 0.97402 0.95922 0.95784 1.69881 1.19543 1.24259 1.39582 0.86691 0.79051 0.84064 0.78369 1.21420 1.20467 1.20328 1.23690 0.93446 0.99060 0.96900 1.77099 1.04505 1.21222 1.10940 0.92576 0.92277 0.92509 0.89787 0.92914 0.92188 0.92806 0.90846 0.89498 0.82253 0.89967 0.95558 0.97610 0.93096 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.19 37.15 0.34 -0.89 16 2 C -0.11 -1.25 3.00 -90.62 -0.27 -1.52 16 3 C -0.14 -1.71 9.08 37.16 0.34 -1.37 16 4 C 0.15 1.86 5.90 -4.04 -0.02 1.83 16 5 N -0.39 -6.72 3.13 -61.36 -0.19 -6.92 16 6 C 0.02 0.33 11.34 -17.22 -0.20 0.13 16 7 C -0.17 -3.81 4.74 -105.05 -0.50 -4.30 16 8 C 0.11 2.69 2.66 -92.93 -0.25 2.44 16 9 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 10 C -0.13 -3.14 8.86 37.16 0.33 -2.81 16 11 C -0.50 -13.79 8.42 -34.44 -0.29 -14.08 16 12 H 0.05 1.50 7.73 -52.49 -0.41 1.09 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.05 1.15 11.52 -17.37 -0.20 0.95 16 20 N -0.32 -6.25 12.34 30.62 0.38 -5.87 16 21 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.16 2.64 8.06 -52.49 -0.42 2.21 16 31 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 32 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 33 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.17 3.47 8.06 -52.49 -0.42 3.05 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -29.83 292.90 -6.35 -36.17 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.74 Total: -1.33 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -0.81 Total: -18.05 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.81 Total: -37.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.83 -6.35 -36.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.269 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds