Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46946 * 2 1 4 4 C 1.35043 * 126.39814 * 265.11892 * 3 2 1 5 5 N 1.30503 * 108.69753 * 180.27149 * 4 3 2 6 6 C 1.34125 * 109.25699 * 359.76824 * 5 4 3 7 7 C 1.34674 * 108.02290 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.59410 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46988 * 205.02484 * 8 7 6 10 10 C 1.50702 * 109.47094 * 85.02873 * 8 7 6 11 11 H 1.08001 * 119.99914 * 304.93174 * 10 8 7 12 12 C 1.37868 * 120.00078 * 124.92831 * 10 8 7 13 13 N 1.31509 * 120.00311 * 355.40470 * 12 10 8 14 14 Si 1.86810 * 120.00076 * 175.12827 * 12 10 8 15 15 H 1.48501 * 109.46791 * 59.99731 * 14 12 10 16 16 H 1.48493 * 109.47139 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46586 * 300.00089 * 14 12 10 18 18 C 1.52995 * 109.47148 * 325.03063 * 8 7 6 19 19 C 1.53001 * 109.47295 * 176.38456 * 18 8 7 20 20 C 1.53002 * 109.47230 * 296.38201 * 18 8 7 21 21 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46845 * 299.99760 * 1 2 3 23 23 H 1.08997 * 109.47839 * 59.99593 * 1 2 3 24 24 H 1.09001 * 109.47191 * 240.00599 * 2 1 3 25 25 H 1.08997 * 109.47220 * 119.99972 * 2 1 3 26 26 H 1.07993 * 125.65359 * 0.02562 * 4 3 2 27 27 H 1.08003 * 125.98998 * 179.97438 * 6 5 4 28 28 H 0.97004 * 120.00638 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.47913 * 56.38233 * 18 8 7 30 30 H 1.09003 * 109.47004 * 54.27523 * 19 18 8 31 31 H 1.08997 * 109.47197 * 174.27620 * 19 18 8 32 32 H 1.09002 * 109.47035 * 294.27855 * 19 18 8 33 33 H 1.08997 * 109.46980 * 59.99972 * 20 18 8 34 34 H 1.08995 * 109.47432 * 179.97438 * 20 18 8 35 35 H 1.08998 * 109.47285 * 300.00308 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3725 2.1060 -1.0830 5 7 2.7606 3.2874 -0.6872 6 6 2.6640 3.3602 0.6486 7 6 2.1979 2.1792 1.0976 8 6 1.9322 1.8054 2.5331 9 1 1.9961 0.7231 2.6446 10 6 0.5536 2.2702 2.9263 11 1 0.2781 3.3074 2.8042 12 6 -0.3560 1.3715 3.4417 13 7 -0.0533 0.0934 3.5064 14 14 -2.0157 1.9703 4.0554 15 1 -2.7488 2.6240 2.9416 16 1 -2.8037 0.8162 4.5574 17 1 -1.8135 2.9471 5.1556 18 6 2.9720 2.4734 3.4349 19 6 2.6492 2.1677 4.8989 20 6 4.3630 1.9338 3.0960 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3635 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.3437 1.7632 -2.1067 27 1 2.9159 4.2160 1.2574 28 1 -0.6931 -0.5390 3.8694 29 1 2.9520 3.5516 3.2760 30 1 2.5691 1.0893 5.0358 31 1 3.4442 2.5567 5.5352 32 1 1.7043 2.6393 5.1688 33 1 4.5930 2.1516 2.0531 34 1 5.1039 2.4100 3.7382 35 1 4.3832 0.8557 3.2550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261237469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = 35.884241 kcal Electronic energy + Delta-G solvation = -16080.622043 eV Core-core repulsion = 13692.950513 eV Total energy + Delta-G solvation = -2387.671530 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14611 -35.88596 -34.10882 -32.28325 -29.64323 -28.89356 -26.81995 -25.66353 -23.20441 -22.93160 -20.74251 -19.36521 -18.20076 -16.47937 -16.29731 -14.66212 -14.44825 -13.98113 -13.56189 -13.26253 -12.82674 -12.70372 -12.44219 -12.08726 -11.75149 -11.57202 -11.37035 -11.22845 -10.97596 -10.80600 -10.57492 -10.25372 -9.95741 -9.92703 -9.48164 -9.28814 -8.77120 -8.61262 -8.56331 -7.21219 -6.13224 -4.14520 3.11205 3.25679 3.29447 3.35393 3.73883 4.11528 4.36491 5.16800 5.32180 5.45454 5.70865 5.74260 5.85936 6.03184 6.09064 6.16393 6.30128 6.35241 6.46985 6.55868 6.73897 6.78499 6.79605 6.90538 7.03799 7.10978 7.21146 7.38907 7.55477 7.72756 7.78299 7.85790 8.17695 8.30933 8.92147 9.02916 9.46434 10.92436 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021985 B = 0.013469 C = 0.010317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.279731 B = 2078.394637 C = 2713.420813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.453 5.453 4 C 0.130 3.870 5 N -0.500 5.500 6 C -0.078 4.078 7 C 0.059 3.941 8 C 0.097 3.903 9 H 0.076 0.924 10 C -0.495 4.495 11 H 0.055 0.945 12 C 0.073 3.927 13 N -0.889 5.889 14 Si 0.884 3.116 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.077 4.077 19 C -0.121 4.121 20 C -0.145 4.145 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.186 0.814 27 H 0.153 0.847 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -1.910 -2.899 4.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.137 5.137 4 C -0.150 4.150 5 N -0.219 5.219 6 C -0.224 4.224 7 C -0.057 4.057 8 C 0.077 3.923 9 H 0.094 0.906 10 C -0.534 4.534 11 H 0.073 0.927 12 C -0.129 4.129 13 N -0.527 5.527 14 Si 0.712 3.288 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.097 4.097 19 C -0.178 4.178 20 C -0.203 4.203 21 H 0.079 0.921 22 H 0.115 0.885 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.203 0.797 27 H 0.171 0.829 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.084 -1.608 -3.374 4.846 hybrid contribution -1.367 -0.394 0.687 1.580 sum 1.717 -2.002 -2.687 3.765 Atomic orbital electron populations 1.22122 0.94237 1.02108 1.03950 1.21588 0.96057 0.80303 1.02881 1.45391 1.48759 1.12407 1.07147 1.24412 1.07773 0.89600 0.93204 1.70040 1.20714 1.18394 1.12792 1.21709 1.11849 0.98283 0.90522 1.22490 0.99945 0.91403 0.91877 1.17720 0.93638 0.99068 0.81888 0.90583 1.20895 0.96449 0.95088 1.40942 0.92717 1.24859 0.97917 0.94852 0.95318 1.69846 1.35845 1.01225 1.45828 0.86774 0.84118 0.78381 0.79544 1.20327 1.21305 1.20026 1.21112 0.93325 0.99229 0.96017 1.21549 0.99929 1.01326 0.95033 1.21908 0.97664 1.00232 1.00454 0.92122 0.88540 0.93779 0.90974 0.88974 0.79683 0.82923 0.92753 0.92884 0.93230 0.95681 0.92084 0.93351 0.94381 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.24 37.16 0.38 -2.60 16 2 C 0.11 1.99 6.64 -4.04 -0.03 1.96 16 3 N -0.45 -9.06 2.75 -113.99 -0.31 -9.38 16 4 C 0.13 2.51 12.56 -90.37 -1.13 1.38 16 5 N -0.50 -10.87 11.25 -14.67 -0.16 -11.03 16 6 C -0.08 -1.73 10.41 -17.81 -0.19 -1.91 16 7 C 0.06 1.31 4.98 -81.60 -0.41 0.91 16 8 C 0.10 2.21 1.94 -92.93 -0.18 2.03 16 9 H 0.08 1.89 5.98 -51.93 -0.31 1.58 16 10 C -0.50 -12.41 6.77 -34.44 -0.23 -12.64 16 11 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 12 C 0.07 1.81 4.62 -17.82 -0.08 1.73 16 13 N -0.89 -22.42 12.36 55.43 0.69 -21.74 16 14 Si 0.88 20.12 29.54 -169.99 -5.02 15.10 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 C -0.08 -1.59 2.19 -90.62 -0.20 -1.79 16 19 C -0.12 -2.44 8.77 37.16 0.33 -2.12 16 20 C -0.15 -2.67 8.97 37.16 0.33 -2.34 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.10 2.14 6.82 -51.93 -0.35 1.79 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 25 H 0.09 1.72 7.29 -51.93 -0.38 1.34 16 26 H 0.19 2.79 8.06 -52.49 -0.42 2.36 16 27 H 0.15 3.23 7.30 -52.48 -0.38 2.84 16 28 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.05 1.09 7.13 -51.93 -0.37 0.72 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.31 7.34 -51.93 -0.38 0.93 16 33 H 0.05 0.91 6.84 -51.93 -0.36 0.56 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -26.85 285.18 -7.39 -34.23 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.46 Total: 3.91 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.41 Total: -15.40 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.21 Total: -42.15 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.85 -7.39 -34.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.118 kcal (2) G-P(sol) polarization free energy of solvation -26.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds