Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46946 * 2 1 4 4 C 1.35043 * 126.39814 * 265.11892 * 3 2 1 5 5 N 1.30503 * 108.69753 * 180.27149 * 4 3 2 6 6 C 1.34125 * 109.25699 * 359.76824 * 5 4 3 7 7 C 1.34674 * 108.02290 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.59410 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46988 * 205.02484 * 8 7 6 10 10 C 1.50702 * 109.47094 * 85.02873 * 8 7 6 11 11 H 1.08001 * 119.99914 * 304.93174 * 10 8 7 12 12 C 1.37868 * 120.00078 * 124.92831 * 10 8 7 13 13 N 1.31509 * 120.00311 * 355.40470 * 12 10 8 14 14 Si 1.86810 * 120.00076 * 175.12827 * 12 10 8 15 15 H 1.48501 * 109.46791 * 59.99731 * 14 12 10 16 16 H 1.48493 * 109.47139 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46586 * 300.00089 * 14 12 10 18 18 C 1.52995 * 109.47148 * 325.03063 * 8 7 6 19 19 C 1.53001 * 109.47295 * 176.38456 * 18 8 7 20 20 C 1.53002 * 109.47230 * 296.38201 * 18 8 7 21 21 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46845 * 299.99760 * 1 2 3 23 23 H 1.08997 * 109.47839 * 59.99593 * 1 2 3 24 24 H 1.09001 * 109.47191 * 240.00599 * 2 1 3 25 25 H 1.08997 * 109.47220 * 119.99972 * 2 1 3 26 26 H 1.07993 * 125.65359 * 0.02562 * 4 3 2 27 27 H 1.08003 * 125.98998 * 179.97438 * 6 5 4 28 28 H 0.97004 * 120.00638 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.47913 * 56.38233 * 18 8 7 30 30 H 1.09003 * 109.47004 * 54.27523 * 19 18 8 31 31 H 1.08997 * 109.47197 * 174.27620 * 19 18 8 32 32 H 1.09002 * 109.47035 * 294.27855 * 19 18 8 33 33 H 1.08997 * 109.46980 * 59.99972 * 20 18 8 34 34 H 1.08995 * 109.47432 * 179.97438 * 20 18 8 35 35 H 1.08998 * 109.47285 * 300.00308 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3725 2.1060 -1.0830 5 7 2.7606 3.2874 -0.6872 6 6 2.6640 3.3602 0.6486 7 6 2.1979 2.1792 1.0976 8 6 1.9322 1.8054 2.5331 9 1 1.9961 0.7231 2.6446 10 6 0.5536 2.2702 2.9263 11 1 0.2781 3.3074 2.8042 12 6 -0.3560 1.3715 3.4417 13 7 -0.0533 0.0934 3.5064 14 14 -2.0157 1.9703 4.0554 15 1 -2.7488 2.6240 2.9416 16 1 -2.8037 0.8162 4.5574 17 1 -1.8135 2.9471 5.1556 18 6 2.9720 2.4734 3.4349 19 6 2.6492 2.1677 4.8989 20 6 4.3630 1.9338 3.0960 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3635 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.3437 1.7632 -2.1067 27 1 2.9159 4.2160 1.2574 28 1 -0.6931 -0.5390 3.8694 29 1 2.9520 3.5516 3.2760 30 1 2.5691 1.0893 5.0358 31 1 3.4442 2.5567 5.5352 32 1 1.7043 2.6393 5.1688 33 1 4.5930 2.1516 2.0531 34 1 5.1039 2.4100 3.7382 35 1 4.3832 0.8557 3.2550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = 23.413279 kcal Electronic energy + Delta-G solvation = -16081.162825 eV Core-core repulsion = 13692.950513 eV Total energy + Delta-G solvation = -2388.212312 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.74129 -37.59199 -35.60974 -34.15444 -31.26559 -30.45543 -28.53965 -27.31230 -24.98473 -24.41773 -22.35707 -20.92524 -19.88557 -18.38986 -17.84015 -16.51350 -16.02226 -15.54443 -15.19654 -14.79459 -14.42586 -14.39067 -14.03236 -13.70034 -13.40941 -13.20049 -12.94160 -12.85082 -12.70678 -12.52525 -12.15364 -11.91102 -11.70456 -11.55367 -11.17193 -11.07540 -10.50749 -10.47545 -10.18406 -8.89183 -8.04905 -6.10784 1.38559 1.42473 1.46273 1.57235 2.24825 2.41903 2.52326 3.23867 3.99898 4.04215 4.14309 4.33194 4.44483 4.48172 4.51676 4.60474 4.82188 4.91669 4.93947 5.00577 5.13754 5.15476 5.23277 5.23988 5.43559 5.52626 5.56867 5.70967 5.76855 5.88242 6.02189 6.14335 6.41004 6.69972 6.97064 7.40592 7.51607 8.98328 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021985 B = 0.013469 C = 0.010317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.279731 B = 2078.394637 C = 2713.420813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.458 5.458 4 C 0.148 3.852 5 N -0.528 5.528 6 C -0.089 4.089 7 C 0.038 3.962 8 C 0.106 3.894 9 H 0.053 0.947 10 C -0.505 4.505 11 H 0.034 0.966 12 C 0.047 3.953 13 N -0.900 5.900 14 Si 0.924 3.076 15 H -0.284 1.284 16 H -0.283 1.283 17 H -0.275 1.275 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.133 4.133 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.232 0.768 27 H 0.152 0.848 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -2.434 -3.897 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 N -0.141 5.141 4 C -0.133 4.133 5 N -0.247 5.247 6 C -0.234 4.234 7 C -0.079 4.079 8 C 0.086 3.914 9 H 0.071 0.929 10 C -0.544 4.544 11 H 0.052 0.948 12 C -0.154 4.154 13 N -0.538 5.538 14 Si 0.752 3.248 15 H -0.210 1.210 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.099 4.099 19 C -0.170 4.170 20 C -0.190 4.190 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.137 0.863 25 H 0.092 0.908 26 H 0.248 0.752 27 H 0.169 0.831 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.575 -2.137 -4.357 6.027 hybrid contribution -1.522 -0.235 0.931 1.799 sum 2.053 -2.371 -3.426 4.645 Atomic orbital electron populations 1.22018 0.94692 1.02861 1.02134 1.21759 0.95584 0.79159 1.04267 1.45594 1.48479 1.13259 1.06764 1.25305 1.04871 0.88561 0.94610 1.70046 1.22338 1.19972 1.12383 1.21786 1.12117 0.98357 0.91125 1.22337 1.01306 0.92095 0.92119 1.17519 0.93185 0.97556 0.83105 0.92906 1.20943 0.97940 0.94086 1.41384 0.94773 1.25215 0.99687 0.94987 0.95480 1.69912 1.36283 1.01520 1.46131 0.86150 0.81857 0.78010 0.78818 1.20958 1.20795 1.20045 1.21088 0.94148 0.98870 0.95749 1.21449 0.99977 1.00126 0.95415 1.21766 0.96680 1.00130 1.00463 0.90138 0.93072 0.92680 0.86331 0.90780 0.75207 0.83069 0.92875 0.93226 0.94747 0.92749 0.94095 0.94080 0.91989 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 10.24 71.98 0.74 -4.72 16 2 C 0.11 3.72 6.64 86.38 0.57 4.29 16 3 N -0.46 -17.55 2.75 -514.56 -1.42 -18.97 16 4 C 0.15 5.27 12.56 180.26 2.26 7.53 16 5 N -0.53 -22.14 11.25 -200.31 -2.25 -24.39 16 6 C -0.09 -3.91 10.41 83.53 0.87 -3.04 16 7 C 0.04 1.69 4.98 40.95 0.20 1.89 16 8 C 0.11 4.91 1.94 -12.29 -0.02 4.89 16 9 H 0.05 2.67 5.98 -2.39 -0.01 2.66 16 10 C -0.51 -25.84 6.77 25.60 0.17 -25.66 16 11 H 0.03 1.85 7.82 -2.91 -0.02 1.83 16 12 C 0.05 2.38 4.62 84.65 0.39 2.77 16 13 N -0.90 -45.89 12.36 21.44 0.27 -45.63 16 14 Si 0.92 41.59 29.54 68.60 2.03 43.62 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 C -0.08 -3.24 2.19 -10.79 -0.02 -3.27 16 19 C -0.11 -4.50 8.77 71.98 0.63 -3.87 16 20 C -0.13 -4.74 8.97 71.98 0.65 -4.10 16 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.05 2.25 6.82 -2.38 -0.02 2.24 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.12 2.77 8.13 -2.39 -0.02 2.75 16 25 H 0.07 2.70 7.29 -2.39 -0.02 2.69 16 26 H 0.23 5.81 8.06 -2.91 -0.02 5.79 16 27 H 0.15 6.46 7.30 -2.91 -0.02 6.44 16 28 H 0.26 12.98 8.31 -92.71 -0.77 12.20 16 29 H 0.05 2.05 7.13 -2.39 -0.02 2.03 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.77 7.34 -2.39 -0.02 1.75 16 33 H 0.04 1.51 6.84 -2.39 -0.02 1.49 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -57.81 285.18 6.11 -51.70 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.05 Total: 16.96 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 6.44 Total: -23.29 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -3.40 Total: -88.99 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -57.81 6.11 -51.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.108 kcal (2) G-P(sol) polarization free energy of solvation -57.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds