Wall clock time and date at job start Mon Mar 30 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46707 * 2 1 4 4 C 1.50700 * 109.46962 * 240.00061 * 2 1 3 5 5 H 1.08000 * 119.99993 * 239.99810 * 4 2 1 6 6 C 1.37877 * 119.99983 * 59.99760 * 4 2 1 7 7 N 1.31518 * 119.99825 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00327 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47101 * 270.00125 * 8 6 4 10 10 H 1.48506 * 109.46954 * 29.99970 * 8 6 4 11 11 H 1.48497 * 109.47384 * 149.99625 * 8 6 4 12 12 C 1.50701 * 109.47011 * 120.00149 * 2 1 3 13 13 C 1.34662 * 126.59411 * 83.52922 * 12 2 1 14 14 N 1.34128 * 108.02308 * 179.86901 * 13 12 2 15 15 C 1.30503 * 109.25484 * 0.40377 * 14 13 12 16 16 N 1.35049 * 108.69626 * 359.74874 * 15 14 13 17 17 C 1.46501 * 126.39467 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47206 * 354.23683 * 17 16 15 19 19 C 1.52998 * 109.46815 * 114.23350 * 17 16 15 20 20 C 1.53003 * 109.47227 * 234.23357 * 17 16 15 21 21 H 1.09000 * 109.46924 * 293.06264 * 1 2 3 22 22 H 1.08999 * 109.47709 * 53.06525 * 1 2 3 23 23 H 1.09008 * 109.46971 * 173.06559 * 1 2 3 24 24 H 0.96994 * 119.99655 * 180.02562 * 7 6 4 25 25 H 1.08002 * 125.98689 * 0.02744 * 13 12 2 26 26 H 1.07990 * 125.64895 * 179.77292 * 15 14 13 27 27 H 1.08996 * 109.47145 * 59.99389 * 18 17 16 28 28 H 1.08990 * 109.47109 * 180.02562 * 18 17 16 29 29 H 1.09006 * 109.46825 * 299.99944 * 18 17 16 30 30 H 1.08997 * 109.47128 * 55.45047 * 19 17 16 31 31 H 1.09003 * 109.46655 * 175.45276 * 19 17 16 32 32 H 1.08999 * 109.47420 * 295.45087 * 19 17 16 33 33 H 1.09004 * 109.46699 * 52.77548 * 20 17 16 34 34 H 1.08998 * 109.46490 * 172.76736 * 20 17 16 35 35 H 1.08997 * 109.46770 * 292.77372 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 2.1380 -0.8591 -3.5566 8 14 0.6258 1.2798 -2.6542 9 1 -0.8021 0.8745 -2.6993 10 1 0.8491 2.1773 -1.4923 11 1 0.9771 1.9953 -3.9071 12 6 2.0323 -0.7105 1.2305 13 6 2.1850 -2.0396 1.3839 14 7 2.6569 -2.2631 2.6194 15 6 2.7944 -1.1236 3.2404 16 7 2.4155 -0.1291 2.4089 17 6 2.4142 1.3042 2.7120 18 6 2.7772 1.5147 4.1834 19 6 3.4410 2.0135 1.8270 20 6 1.0231 1.8813 2.4423 21 1 -0.3633 0.4026 0.9455 22 1 -0.3634 0.6175 -0.8214 23 1 -0.3633 -1.0202 -0.1241 24 1 1.9039 -0.5274 -4.4375 25 1 1.9682 -2.7932 0.6413 26 1 3.1521 -0.9969 4.2514 27 1 3.7681 1.1036 4.3756 28 1 2.7757 2.5810 4.4090 29 1 2.0456 1.0093 4.8140 30 1 3.2295 1.7969 0.7799 31 1 3.3836 3.0891 1.9944 32 1 4.4415 1.6600 2.0762 33 1 0.2761 1.2927 2.9749 34 1 0.9852 2.9145 2.7875 35 1 0.8171 1.8478 1.3725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261240561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:12 Heat of formation + Delta-G solvation = 55.996825 kcal Electronic energy + Delta-G solvation = -16101.812745 eV Core-core repulsion = 13715.013362 eV Total energy + Delta-G solvation = -2386.799383 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.58957 -36.71061 -34.64583 -31.60055 -30.43112 -28.10602 -27.39175 -27.05108 -24.98304 -22.41737 -21.30249 -20.08655 -18.12009 -16.62986 -16.35848 -15.10139 -14.70495 -14.38293 -13.63893 -13.48211 -13.16852 -13.00658 -12.82666 -12.45803 -12.20056 -12.07004 -11.80707 -11.74140 -11.35163 -11.16209 -10.98407 -10.79686 -10.52663 -10.15350 -9.56219 -9.35862 -8.92862 -8.82344 -8.61393 -7.40938 -6.10513 -4.10170 2.86309 3.22168 3.28244 3.30593 3.33915 3.99402 4.34748 4.62570 4.83097 4.94391 5.19252 5.22815 5.43065 5.47356 5.54158 5.66878 5.75013 5.87537 5.87701 5.94446 6.09954 6.20272 6.28022 6.35708 6.56610 6.58570 6.64459 6.88692 7.04853 7.40923 7.63253 7.71628 7.96745 8.48911 8.86763 8.96866 9.49248 11.02309 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.011177 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.089112 B = 2504.447927 C = 2970.894211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.036 0.964 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.297 1.297 12 C 0.039 3.961 13 C -0.035 4.035 14 N -0.500 5.500 15 C 0.143 3.857 16 N -0.454 5.454 17 C 0.158 3.842 18 C -0.154 4.154 19 C -0.166 4.166 20 C -0.168 4.168 21 H 0.032 0.968 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.265 0.735 25 H 0.166 0.834 26 H 0.190 0.810 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 8.000 12.746 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.057 3.943 3 H 0.054 0.946 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.224 1.224 12 C -0.075 4.075 13 C -0.181 4.181 14 N -0.219 5.219 15 C -0.137 4.137 16 N -0.140 5.140 17 C 0.074 3.926 18 C -0.211 4.211 19 C -0.223 4.223 20 C -0.225 4.225 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.184 0.816 26 H 0.206 0.794 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.862 7.354 12.921 14.892 hybrid contribution -0.736 1.580 -0.550 1.828 sum -1.598 8.934 12.370 15.343 Atomic orbital electron populations 1.22279 0.98220 1.01637 0.98404 1.17880 0.91551 0.95582 0.89292 0.94587 1.20954 1.32045 1.13844 0.87704 0.89994 1.24951 0.95669 0.96532 0.95791 1.69878 1.45388 1.40186 0.97910 0.86913 0.80944 0.83875 0.76811 1.20465 1.19449 1.22412 1.21668 1.03781 0.94072 0.87957 1.21977 1.07277 0.94455 0.94414 1.70186 1.18655 1.25753 1.07285 1.24474 1.07953 0.82920 0.98341 1.45616 1.49520 1.06435 1.12434 1.20673 0.97127 0.78847 0.95982 1.22113 1.02319 1.02975 0.93721 1.22323 0.98333 0.99940 1.01738 1.22444 0.94859 1.00670 1.04553 0.94869 0.94090 0.92204 0.92548 0.81633 0.79359 0.91552 0.90670 0.91628 0.90005 0.91285 0.92006 0.91946 0.91289 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 7.90 37.16 0.29 -2.84 16 2 C 0.08 1.75 1.22 -92.92 -0.11 1.64 16 3 H 0.04 0.82 3.52 -51.93 -0.18 0.64 16 4 C -0.51 -13.86 8.84 -34.44 -0.30 -14.17 16 5 H 0.08 2.47 7.18 -52.49 -0.38 2.09 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 8 Si 0.88 21.15 24.30 -169.99 -4.13 17.02 16 9 H -0.28 -6.51 6.93 56.52 0.39 -6.12 16 10 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 11 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 12 C 0.04 0.84 5.34 -81.60 -0.44 0.41 16 13 C -0.04 -0.79 10.80 -17.81 -0.19 -0.99 16 14 N -0.50 -10.53 11.25 -14.67 -0.17 -10.69 16 15 C 0.14 2.53 11.52 -90.37 -1.04 1.49 16 16 N -0.45 -8.10 2.61 -100.14 -0.26 -8.36 16 17 C 0.16 2.22 1.04 -131.82 -0.14 2.09 16 18 C -0.15 -1.57 7.39 37.16 0.27 -1.30 16 19 C -0.17 -2.35 8.56 37.16 0.32 -2.04 16 20 C -0.17 -2.29 7.39 37.16 0.27 -2.01 16 21 H 0.03 0.61 6.25 -51.93 -0.32 0.28 16 22 H 0.04 0.88 3.49 -51.93 -0.18 0.70 16 23 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.17 3.81 7.75 -52.49 -0.41 3.40 16 26 H 0.19 2.53 7.15 -52.49 -0.38 2.16 16 27 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.08 1.43 5.60 -51.93 -0.29 1.14 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.32 4.36 -51.93 -0.23 1.09 16 LS Contribution 266.23 15.07 4.01 4.01 Total: -1.00 -30.91 266.23 -5.82 -36.73 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.89 Total: 3.17 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.16 Total: -15.79 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.35 Total: -45.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.13 Total: 17.02 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.91 -5.82 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.726 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds