Wall clock time and date at job start Mon Mar 30 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46707 * 2 1 4 4 C 1.50700 * 109.46962 * 240.00061 * 2 1 3 5 5 H 1.08000 * 119.99993 * 239.99810 * 4 2 1 6 6 C 1.37877 * 119.99983 * 59.99760 * 4 2 1 7 7 N 1.31518 * 119.99825 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00327 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47101 * 270.00125 * 8 6 4 10 10 H 1.48506 * 109.46954 * 29.99970 * 8 6 4 11 11 H 1.48497 * 109.47384 * 149.99625 * 8 6 4 12 12 C 1.50701 * 109.47011 * 120.00149 * 2 1 3 13 13 C 1.34662 * 126.59411 * 83.52922 * 12 2 1 14 14 N 1.34128 * 108.02308 * 179.86901 * 13 12 2 15 15 C 1.30503 * 109.25484 * 0.40377 * 14 13 12 16 16 N 1.35049 * 108.69626 * 359.74874 * 15 14 13 17 17 C 1.46501 * 126.39467 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47206 * 354.23683 * 17 16 15 19 19 C 1.52998 * 109.46815 * 114.23350 * 17 16 15 20 20 C 1.53003 * 109.47227 * 234.23357 * 17 16 15 21 21 H 1.09000 * 109.46924 * 293.06264 * 1 2 3 22 22 H 1.08999 * 109.47709 * 53.06525 * 1 2 3 23 23 H 1.09008 * 109.46971 * 173.06559 * 1 2 3 24 24 H 0.96994 * 119.99655 * 180.02562 * 7 6 4 25 25 H 1.08002 * 125.98689 * 0.02744 * 13 12 2 26 26 H 1.07990 * 125.64895 * 179.77292 * 15 14 13 27 27 H 1.08996 * 109.47145 * 59.99389 * 18 17 16 28 28 H 1.08990 * 109.47109 * 180.02562 * 18 17 16 29 29 H 1.09006 * 109.46825 * 299.99944 * 18 17 16 30 30 H 1.08997 * 109.47128 * 55.45047 * 19 17 16 31 31 H 1.09003 * 109.46655 * 175.45276 * 19 17 16 32 32 H 1.08999 * 109.47420 * 295.45087 * 19 17 16 33 33 H 1.09004 * 109.46699 * 52.77548 * 20 17 16 34 34 H 1.08998 * 109.46490 * 172.76736 * 20 17 16 35 35 H 1.08997 * 109.46770 * 292.77372 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 2.1380 -0.8591 -3.5566 8 14 0.6258 1.2798 -2.6542 9 1 -0.8021 0.8745 -2.6993 10 1 0.8491 2.1773 -1.4923 11 1 0.9771 1.9953 -3.9071 12 6 2.0323 -0.7105 1.2305 13 6 2.1850 -2.0396 1.3839 14 7 2.6569 -2.2631 2.6194 15 6 2.7944 -1.1236 3.2404 16 7 2.4155 -0.1291 2.4089 17 6 2.4142 1.3042 2.7120 18 6 2.7772 1.5147 4.1834 19 6 3.4410 2.0135 1.8270 20 6 1.0231 1.8813 2.4423 21 1 -0.3633 0.4026 0.9455 22 1 -0.3634 0.6175 -0.8214 23 1 -0.3633 -1.0202 -0.1241 24 1 1.9039 -0.5274 -4.4375 25 1 1.9682 -2.7932 0.6413 26 1 3.1521 -0.9969 4.2514 27 1 3.7681 1.1036 4.3756 28 1 2.7757 2.5810 4.4090 29 1 2.0456 1.0093 4.8140 30 1 3.2295 1.7969 0.7799 31 1 3.3836 3.0891 1.9944 32 1 4.4415 1.6600 2.0762 33 1 0.2761 1.2927 2.9749 34 1 0.9852 2.9145 2.7875 35 1 0.8171 1.8478 1.3725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261240561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:12 Heat of formation + Delta-G solvation = 36.547494 kcal Electronic energy + Delta-G solvation = -16102.656131 eV Core-core repulsion = 13715.013362 eV Total energy + Delta-G solvation = -2387.642769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.07914 -37.89530 -36.50669 -33.65177 -31.83966 -29.55204 -28.48039 -28.16581 -26.94169 -24.06306 -22.77014 -21.62485 -19.60502 -18.58532 -17.79688 -16.68807 -16.28919 -15.71945 -15.04545 -14.95531 -14.70933 -14.49946 -14.36939 -14.07734 -13.31256 -13.26351 -13.07249 -12.96041 -12.89893 -12.64539 -12.40996 -12.18197 -12.05097 -11.79578 -11.40090 -11.23291 -10.76863 -10.62787 -10.28963 -9.05808 -8.27955 -6.32915 1.30507 1.33766 1.35580 1.45752 1.99154 2.31438 2.36759 3.06853 3.63091 3.84294 3.88181 3.93131 4.00946 4.39257 4.47199 4.58848 4.64316 4.73299 4.74671 4.78255 4.84827 4.88415 4.92288 4.96137 5.09009 5.13718 5.24401 5.34259 5.44878 5.61126 5.79033 5.95278 6.33164 6.59669 6.73605 7.29074 7.32248 8.88814 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.011177 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.089112 B = 2504.447927 C = 2970.894211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.046 0.954 4 C -0.512 4.512 5 H 0.033 0.967 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.239 1.239 11 H -0.299 1.299 12 C 0.026 3.974 13 C -0.064 4.064 14 N -0.533 5.533 15 C 0.168 3.832 16 N -0.449 5.449 17 C 0.146 3.854 18 C -0.148 4.148 19 C -0.165 4.165 20 C -0.168 4.168 21 H 0.064 0.936 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.266 0.734 25 H 0.139 0.861 26 H 0.238 0.762 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 11.146 15.724 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.065 3.935 3 H 0.064 0.936 4 C -0.550 4.550 5 H 0.051 0.949 6 C -0.183 4.183 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.192 1.192 10 H -0.162 1.162 11 H -0.226 1.226 12 C -0.090 4.090 13 C -0.209 4.209 14 N -0.253 5.253 15 C -0.113 4.113 16 N -0.133 5.133 17 C 0.063 3.937 18 C -0.205 4.205 19 C -0.222 4.222 20 C -0.225 4.225 21 H 0.083 0.917 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.254 0.746 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.589 10.517 15.926 19.151 hybrid contribution -0.403 0.539 -1.399 1.552 sum -1.991 11.056 14.527 18.364 Atomic orbital electron populations 1.22177 0.96698 1.01040 1.00089 1.17688 0.92644 0.95304 0.87859 0.93598 1.21178 1.31080 1.12570 0.90172 0.94882 1.25842 0.97236 1.00120 0.95142 1.70048 1.47613 1.42575 0.98625 0.85880 0.79172 0.79985 0.77630 1.19205 1.16225 1.22628 1.21329 1.04851 0.93711 0.89113 1.21779 1.09168 0.94831 0.95160 1.70132 1.20301 1.27960 1.06860 1.25359 1.04763 0.81807 0.99393 1.45857 1.48244 1.08368 1.10849 1.21174 0.97642 0.76166 0.98705 1.22133 1.02840 1.05241 0.90296 1.22326 0.98348 1.02262 0.99293 1.22454 0.94306 1.02917 1.02846 0.91697 0.94095 0.93642 0.92497 0.84370 0.74603 0.90867 0.87737 0.90722 0.93905 0.87823 0.92084 0.91941 0.87655 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 7.90 71.98 0.57 -5.33 16 2 C 0.08 3.89 1.22 -12.28 -0.02 3.88 16 3 H 0.05 2.04 3.52 -2.39 -0.01 2.03 16 4 C -0.51 -29.31 8.84 25.60 0.23 -29.09 16 5 H 0.03 2.15 7.18 -2.91 -0.02 2.13 16 6 C 0.01 0.79 5.45 84.65 0.46 1.25 16 7 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 8 Si 0.95 43.44 24.30 68.60 1.67 45.11 16 9 H -0.27 -11.67 6.93 99.48 0.69 -10.98 16 10 H -0.24 -9.70 6.53 99.48 0.65 -9.05 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 12 C 0.03 1.11 5.34 40.95 0.22 1.33 16 13 C -0.06 -3.00 10.80 83.52 0.90 -2.09 16 14 N -0.53 -22.42 11.25 -200.32 -2.25 -24.67 16 15 C 0.17 5.51 11.52 180.26 2.08 7.59 16 16 N -0.45 -15.04 2.61 -470.72 -1.23 -16.26 16 17 C 0.15 3.52 1.04 3.61 0.00 3.53 16 18 C -0.15 -2.18 7.39 71.98 0.53 -1.65 16 19 C -0.16 -4.16 8.56 71.98 0.62 -3.55 16 20 C -0.17 -3.84 7.39 71.98 0.53 -3.31 16 21 H 0.06 2.25 6.25 -2.39 -0.01 2.23 16 22 H 0.04 1.68 3.49 -2.39 -0.01 1.67 16 23 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.14 7.02 7.75 -2.91 -0.02 6.99 16 26 H 0.24 5.18 7.15 -2.92 -0.02 5.16 16 27 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.01 8.07 -2.38 -0.02 1.00 16 30 H 0.04 1.42 5.60 -2.39 -0.01 1.41 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.05 1.57 4.36 -2.39 -0.01 1.56 16 Total: -1.00 -71.83 266.23 5.61 -66.22 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.00 Total: 16.27 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 6.12 Total: -27.45 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -3.18 Total: -100.15 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -71.83 5.61 -66.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.763 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds