Wall clock time and date at job start Mon Mar 30 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 C 1.50693 * 109.47065 * 120.00293 * 2 1 3 5 5 C 1.39868 * 125.90151 * 275.28041 * 4 2 1 6 6 C 1.35315 * 107.92275 * 180.14583 * 5 4 2 7 7 C 1.50697 * 126.12512 * 179.90747 * 6 5 4 8 8 H 1.09004 * 109.47205 * 204.68802 * 7 6 5 9 9 C 1.53002 * 109.47419 * 84.69219 * 7 6 5 10 10 C 1.50700 * 109.47266 * 324.68709 * 7 6 5 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 7 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47163 * 59.99902 * 14 12 10 16 16 H 1.48495 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99897 * 14 12 10 18 18 N 1.34950 * 107.74661 * 359.64188 * 6 5 4 19 19 C 1.46498 * 126.03925 * 180.24788 * 18 6 5 20 20 N 1.30837 * 125.90087 * 95.02553 * 4 2 1 21 21 H 1.09008 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47075 * 299.99399 * 1 2 3 23 23 H 1.09001 * 109.47503 * 59.99630 * 1 2 3 24 24 H 1.08996 * 109.46514 * 240.00200 * 2 1 3 25 25 H 1.09002 * 109.46725 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47371 * 300.00451 * 3 2 1 27 27 H 1.09002 * 109.46792 * 60.00427 * 3 2 1 28 28 H 1.07998 * 126.03906 * 0.02562 * 5 4 2 29 29 H 1.08996 * 109.46948 * 59.99616 * 9 7 6 30 30 H 1.08996 * 109.46989 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.46768 * 299.99449 * 9 7 6 32 32 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.46899 * 89.99655 * 19 18 6 34 34 H 1.08997 * 109.47043 * 210.00358 * 19 18 6 35 35 H 1.09005 * 109.46739 * 330.00267 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2074 -0.1375 2.4943 6 6 2.6757 -1.0972 3.3253 7 6 3.0090 -0.9236 4.7846 8 1 3.7413 -1.6743 5.0819 9 6 1.7389 -1.0910 5.6213 10 6 3.5807 0.4525 5.0091 11 1 3.6913 1.1335 4.1782 12 6 3.9626 0.8423 6.2754 13 7 3.8229 0.0150 7.2882 14 14 4.6706 2.5483 6.5538 15 1 3.6722 3.5706 6.1496 16 1 4.9991 2.7193 7.9918 17 1 5.9029 2.7115 5.7413 18 7 2.7854 -2.2391 2.6145 19 6 3.2502 -3.5311 3.1253 20 7 2.3756 -1.9709 1.3021 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 2.0064 0.8899 2.7595 29 1 1.3254 -2.0863 5.4589 30 1 1.9799 -0.9650 6.6767 31 1 1.0066 -0.3403 5.3241 32 1 4.0919 0.2891 8.1789 33 1 2.4003 -4.0998 3.5023 34 1 3.7321 -4.0875 2.3214 35 1 3.9643 -3.3670 3.9324 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:50 Heat of formation + Delta-G solvation = 34.938468 kcal Electronic energy + Delta-G solvation = -15419.164935 eV Core-core repulsion = 13031.452393 eV Total energy + Delta-G solvation = -2387.712542 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11271 -36.98143 -36.04367 -33.23457 -32.92332 -29.67496 -27.94168 -27.30813 -27.11417 -23.99220 -23.20422 -20.60689 -19.77320 -18.07780 -17.52449 -16.44277 -16.32106 -15.63958 -15.17139 -14.85904 -14.62725 -14.19184 -13.88193 -13.56610 -13.32149 -13.19633 -12.88173 -12.81495 -12.72323 -12.54141 -12.22658 -12.19858 -12.07959 -11.94495 -11.56539 -11.22290 -11.02846 -10.50160 -9.81366 -9.19336 -8.13351 -6.25461 1.11798 1.44828 1.45661 1.53214 1.79055 2.03853 2.44784 3.16642 3.62800 3.96914 4.16853 4.22428 4.34318 4.39389 4.55849 4.61589 4.66401 4.83440 4.89481 4.97570 5.00475 5.01865 5.06448 5.11804 5.20495 5.33537 5.44168 5.50083 5.61574 5.80874 5.93612 5.97503 6.18784 6.40985 6.79247 6.98207 7.42330 8.92515 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.009039 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.023477 B = 3096.776075 C = 3787.259910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 C -0.137 4.137 4 C 0.074 3.926 5 C -0.284 4.284 6 C 0.114 3.886 7 C 0.102 3.898 8 H 0.017 0.983 9 C -0.117 4.117 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.019 3.981 13 N -0.915 5.915 14 Si 0.956 3.044 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.274 1.274 18 N -0.392 5.392 19 C 0.099 3.901 20 N -0.340 5.340 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.134 0.866 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -0.860 -10.045 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.032 4.032 3 C -0.195 4.195 4 C -0.092 4.092 5 C -0.313 4.313 6 C -0.013 4.013 7 C 0.081 3.919 8 H 0.035 0.965 9 C -0.175 4.175 10 C -0.561 4.561 11 H 0.075 0.925 12 C -0.180 4.180 13 N -0.554 5.554 14 Si 0.781 3.219 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.200 1.200 18 N -0.174 5.174 19 C -0.041 4.041 20 N -0.162 5.162 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.689 -2.151 -10.427 11.267 hybrid contribution 0.497 1.282 1.162 1.800 sum -3.191 -0.868 -9.265 9.837 Atomic orbital electron populations 1.21744 0.92747 1.01685 1.02900 1.19613 0.96623 0.95448 0.91486 1.21777 1.00666 0.94085 1.02953 1.22730 0.98416 0.91332 0.96715 1.21020 1.16436 1.00794 0.93007 1.21914 0.96560 0.86348 0.96515 1.17385 0.94215 0.97051 0.83203 0.96478 1.21573 0.96281 0.97047 1.02613 1.21287 1.41591 0.99163 0.94104 0.92486 1.25653 0.95835 1.00866 0.95681 1.69969 1.48163 1.37076 1.00214 0.85635 0.78953 0.80288 0.76978 1.19457 1.20751 1.19975 1.48629 1.52297 1.09603 1.06891 1.21950 1.00804 0.80884 1.00511 1.77005 1.24168 1.17401 0.97648 0.93586 0.93096 0.89275 0.89614 0.93615 0.89358 0.92800 0.84771 0.95742 0.91056 0.95250 0.92683 0.90037 0.88161 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.18 71.98 0.66 -2.55 16 2 C -0.01 -0.32 3.38 -11.54 -0.04 -0.36 16 3 C -0.14 -3.46 8.79 71.98 0.63 -2.82 16 4 C 0.07 2.84 6.12 43.10 0.26 3.11 16 5 C -0.28 -12.37 8.87 21.99 0.20 -12.18 16 6 C 0.11 5.24 5.85 41.40 0.24 5.48 16 7 C 0.10 5.10 2.50 -12.29 -0.03 5.07 16 8 H 0.02 0.91 6.95 -2.38 -0.02 0.90 16 9 C -0.12 -5.63 8.95 71.98 0.64 -4.98 16 10 C -0.52 -28.35 8.25 25.60 0.21 -28.14 16 11 H 0.06 3.10 6.84 -2.91 -0.02 3.08 16 12 C 0.02 1.01 5.31 84.66 0.45 1.46 16 13 N -0.92 -50.82 11.31 21.45 0.24 -50.57 16 14 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 N -0.39 -16.25 4.01 -356.04 -1.43 -17.68 16 19 C 0.10 3.16 11.27 127.77 1.44 4.60 16 20 N -0.34 -13.92 12.57 -47.39 -0.60 -14.51 16 21 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.45 7.31 -2.39 -0.02 1.44 16 28 H 0.13 5.88 7.04 -2.91 -0.02 5.86 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 3.72 6.06 -2.39 -0.01 3.70 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.08 2.74 6.98 -2.38 -0.02 2.72 16 Total: -1.00 -61.96 288.12 5.96 -56.00 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.05 Total: 13.34 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.67 Total: -31.30 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -1.78 Total: -82.77 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.96 5.96 -56.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.939 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds