Wall clock time and date at job start Mon Mar 30 2020 03:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86804 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47112 * 239.99558 * 3 2 1 5 5 H 1.48498 * 109.46915 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47392 * 119.98988 * 3 2 1 7 7 C 1.39958 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.41276 * 119.99645 * 0.02562 * 7 2 1 10 10 C 1.40473 * 119.71848 * 179.97438 * 9 7 2 11 11 C 1.39121 * 118.44338 * 180.02562 * 10 9 7 12 12 C 1.46460 * 135.38846 * 179.97438 * 11 10 9 13 13 C 1.34187 * 106.11102 * 179.35291 * 12 11 10 14 14 O 1.34379 * 110.22580 * 0.56726 * 13 12 11 15 15 C 1.34568 * 110.99355 * 359.48379 * 14 13 12 16 16 C 1.39523 * 134.08157 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.61579 * 0.03199 * 16 15 14 18 18 N 1.31387 * 120.77321 * 179.74631 * 16 15 14 19 19 H 0.97000 * 120.00485 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.77805 * 0.04357 * 10 9 7 21 21 H 1.07991 * 126.94352 * 359.97438 * 12 11 10 22 22 H 1.07998 * 124.88553 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2770 2.7464 -0.0006 6 1 3.0956 1.6966 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0878 -1.2120 0.0010 9 6 1.3015 -2.4355 0.0005 10 6 2.0098 -3.6486 0.0005 11 6 1.2876 -4.8376 0.0000 12 6 1.6254 -6.2627 -0.0007 13 6 0.4570 -6.9224 0.0136 14 8 -0.5675 -6.0529 0.0105 15 6 -0.1221 -4.7830 0.0054 16 6 -0.7466 -3.5354 0.0003 17 17 -2.4801 -3.4437 0.0005 18 7 -0.0380 -2.4290 0.0009 19 1 -0.4851 0.8400 -0.0004 20 1 3.0898 -3.6579 0.0012 21 1 2.6150 -6.6952 -0.0012 22 1 0.3547 -7.9975 0.0174 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261246198.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:16 Heat of formation + Delta-G solvation = 9.317212 kcal Electronic energy + Delta-G solvation = -12494.674807 eV Core-core repulsion = 10041.342463 eV Total energy + Delta-G solvation = -2453.332344 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.98196 -39.42643 -37.38517 -35.38778 -33.65592 -31.62165 -30.70297 -27.57220 -24.35681 -23.29356 -22.02912 -19.76515 -18.55448 -17.56046 -17.07395 -16.88571 -16.22800 -15.41635 -14.93850 -14.41999 -13.92287 -13.67649 -13.03816 -12.85337 -12.79259 -12.49850 -12.42748 -12.00898 -11.88730 -11.20538 -10.95596 -10.09602 -9.64448 -9.18636 -8.45507 -6.56896 0.21020 0.70389 1.07269 1.41942 1.51628 1.55460 1.73386 2.15286 2.21331 2.66041 3.61361 3.84323 4.05837 4.31308 4.53286 4.67762 4.81900 5.16964 5.25971 5.33307 5.59422 5.72346 6.04763 6.33609 6.55033 6.74287 7.66866 8.34400 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.010113 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.079055 B = 2768.096543 C = 3532.325885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.021 3.979 3 Si 0.995 3.005 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.451 4.451 8 H 0.103 0.897 9 C 0.223 3.777 10 C -0.270 4.270 11 C -0.064 4.064 12 C -0.251 4.251 13 C 0.032 3.968 14 O -0.206 6.206 15 C -0.136 4.136 16 C 0.218 3.782 17 Cl -0.059 7.059 18 N -0.471 5.471 19 H 0.284 0.716 20 H 0.127 0.873 21 H 0.180 0.820 22 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -6.234 0.018 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.481 4.481 8 H 0.121 0.879 9 C 0.102 3.898 10 C -0.293 4.293 11 C -0.070 4.070 12 C -0.270 4.270 13 C -0.034 4.034 14 O -0.107 6.107 15 C -0.188 4.188 16 C 0.041 3.959 17 Cl -0.031 7.031 18 N -0.186 5.186 19 H 0.095 0.905 20 H 0.144 0.856 21 H 0.198 0.802 22 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 0.831 -5.288 0.020 5.353 hybrid contribution 0.486 0.013 -0.002 0.487 sum 1.317 -5.275 0.017 5.437 Atomic orbital electron populations 1.70199 1.09027 1.29926 1.28343 1.27105 0.95782 1.04957 0.92334 0.85066 0.78477 0.74742 0.80307 1.17991 1.19417 1.17985 1.19958 0.95310 0.89479 1.43312 0.87857 1.18753 0.86033 0.93935 0.91057 1.21303 0.99743 0.90335 1.17905 1.20257 0.91987 0.95615 0.99191 1.22680 1.01035 0.89232 1.14051 1.24980 0.84048 0.96724 0.97662 1.83808 1.36239 1.13282 1.77420 1.19846 0.93374 0.84210 1.21331 1.20836 0.87191 0.86329 1.01531 1.98288 1.09217 1.98745 1.96810 1.67967 1.08713 1.23685 1.18224 0.90505 0.85552 0.80229 0.72572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.28 11.45 21.83 0.25 -40.03 14 2 C 0.02 1.03 5.50 85.26 0.47 1.49 14 3 Si 0.99 36.83 29.56 68.60 2.03 38.86 14 4 H -0.26 -9.08 7.11 99.48 0.71 -8.38 14 5 H -0.27 -9.60 7.11 99.48 0.71 -8.90 14 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 7 C -0.45 -23.74 9.13 23.43 0.21 -23.53 14 8 H 0.10 4.94 7.85 -2.91 -0.02 4.92 14 9 C 0.22 12.39 6.56 40.11 0.26 12.65 14 10 C -0.27 -13.42 9.90 23.03 0.23 -13.19 14 11 C -0.06 -2.96 6.45 -20.23 -0.13 -3.09 14 12 C -0.25 -8.48 11.14 23.49 0.26 -8.22 14 13 C 0.03 0.96 11.96 66.90 0.80 1.76 14 14 O -0.21 -8.27 10.56 -5.82 -0.06 -8.34 14 15 C -0.14 -6.53 7.26 23.28 0.17 -6.36 14 16 C 0.22 11.36 7.31 85.07 0.62 11.98 14 17 Cl -0.06 -2.64 29.11 -2.72 -0.08 -2.72 14 18 N -0.47 -26.84 7.78 -179.64 -1.40 -28.23 14 19 H 0.28 13.76 8.30 -92.71 -0.77 12.99 14 20 H 0.13 5.66 8.06 -2.91 -0.02 5.64 14 21 H 0.18 4.68 8.06 -2.92 -0.02 4.65 14 22 H 0.26 4.00 8.06 -2.91 -0.02 3.98 14 Total: -1.00 -65.33 225.28 4.89 -60.43 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.26 Total: 6.54 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 2.90 Total: -26.52 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.15 Total: -68.27 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.06 Total: -8.34 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.08 Total: -2.72 kcal Total: -65.33 4.89 -60.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246198.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.752 kcal (2) G-P(sol) polarization free energy of solvation -65.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds