Wall clock time and date at job start Mon Mar 30 2020 03:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30951 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48499 * 109.47095 * 269.99424 * 3 2 1 5 5 H 1.48495 * 109.47141 * 29.99888 * 3 2 1 6 6 H 1.48508 * 109.46743 * 149.99954 * 3 2 1 7 7 C 1.39947 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.39874 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.37573 * 124.97911 * 180.02562 * 9 7 2 11 11 C 1.38644 * 113.73541 * 179.76690 * 10 9 7 12 12 C 1.40651 * 112.98518 * 0.70586 * 11 10 9 13 13 S 1.69808 * 111.01647 * 359.10735 * 12 11 10 14 14 N 1.38082 * 121.35299 * 178.76583 * 12 11 10 15 15 C 1.47352 * 116.21592 * 336.59971 * 14 12 11 16 16 C 1.52951 * 109.70986 * 51.19240 * 15 14 12 17 17 C 1.43178 * 126.59003 * 181.23711 * 11 10 9 18 18 O 1.21436 * 121.12881 * 355.68640 * 17 11 10 19 19 H 0.96996 * 120.00049 * 0.02562 * 1 2 3 20 20 H 1.07998 * 123.13382 * 359.80756 * 10 9 7 21 21 H 0.97002 * 121.89666 * 156.58430 * 14 12 11 22 22 H 1.09000 * 109.43183 * 291.12022 * 15 14 12 23 23 H 1.09002 * 109.39330 * 171.24266 * 15 14 12 24 24 H 1.08996 * 109.31660 * 185.91040 * 16 15 14 25 25 H 1.09001 * 109.31265 * 66.48265 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6179 0.0000 4 1 2.4910 2.0465 -1.4001 5 1 1.4408 2.6527 0.7000 6 1 3.5410 1.4403 0.7001 7 6 2.0093 -1.2119 0.0005 8 1 3.0894 -1.2118 0.0010 9 6 1.3100 -2.4233 0.0005 10 6 1.8919 -3.6699 0.0016 11 6 0.9780 -4.7124 0.0065 12 6 -0.3577 -4.2719 -0.0065 13 16 -0.4397 -2.5758 0.0002 14 7 -1.4091 -5.1667 -0.0294 15 6 -1.1116 -6.5071 -0.5642 16 6 0.1234 -7.0786 0.1339 17 6 1.2796 -6.1118 0.0334 18 8 2.4262 -6.5080 -0.0230 19 1 -0.4850 0.8400 -0.0004 20 1 2.9611 -3.8223 -0.0006 21 1 -2.2935 -4.9266 0.2888 22 1 -0.9225 -6.4364 -1.6354 23 1 -1.9637 -7.1640 -0.3891 24 1 0.4000 -8.0217 -0.3375 25 1 -0.1066 -7.2576 1.1842 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261246881.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:26 Heat of formation + Delta-G solvation = -28.534908 kcal Electronic energy + Delta-G solvation = -12711.111015 eV Core-core repulsion = 10394.014081 eV Total energy + Delta-G solvation = -2317.096934 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.99506 -36.21167 -34.93430 -33.19224 -30.19196 -28.68202 -25.23284 -23.12788 -22.26848 -19.86486 -17.95018 -17.03375 -16.62771 -15.50729 -14.79809 -14.53352 -13.89242 -13.80441 -13.15402 -12.87310 -12.62815 -11.88350 -11.66531 -11.40580 -11.24034 -10.90781 -10.86442 -10.36825 -10.35075 -9.66853 -9.25982 -8.75451 -8.48665 -6.98260 -6.94224 -6.68292 -4.25207 2.08973 2.79218 2.99154 3.05423 3.10338 3.32686 3.74473 3.94034 4.31371 4.41587 5.04493 5.11292 5.40722 5.56789 5.65084 5.88013 6.23846 6.55499 6.85645 7.00489 7.39532 7.54752 7.81681 7.97118 8.17741 8.37182 8.50253 8.67802 8.75054 9.98871 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.052003 B = 0.008815 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.299510 B = 3175.549075 C = 3678.291662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.051 3.949 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.399 4.399 8 H 0.092 0.908 9 C -0.010 4.010 10 C -0.259 4.259 11 C -0.233 4.233 12 C -0.052 4.052 13 S 0.243 5.757 14 N -0.723 5.723 15 C 0.143 3.857 16 C -0.182 4.182 17 C 0.418 3.582 18 O -0.503 6.503 19 H 0.294 0.706 20 H 0.109 0.891 21 H 0.398 0.602 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 -3.140 -0.054 6.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.164 4.164 3 Si 0.758 3.242 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.435 4.435 8 H 0.110 0.890 9 C -0.130 4.130 10 C -0.285 4.285 11 C -0.250 4.250 12 C -0.271 4.271 13 S 0.503 5.497 14 N -0.362 5.362 15 C 0.016 3.984 16 C -0.221 4.221 17 C 0.301 3.699 18 O -0.385 6.385 19 H 0.107 0.893 20 H 0.127 0.873 21 H 0.234 0.766 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.330 -2.316 -0.138 6.742 hybrid contribution 1.104 -0.351 0.119 1.165 sum -5.226 -2.666 -0.019 5.867 Atomic orbital electron populations 1.68480 1.07370 1.30008 1.38957 1.26010 0.95007 1.02195 0.93195 0.85843 0.79997 0.79070 0.79308 1.19311 1.20061 1.18440 1.18959 0.95177 0.88480 1.40906 0.88970 1.21387 0.93577 0.95944 1.02063 1.19465 0.97706 0.89745 1.21544 1.18720 0.92009 0.94506 1.19773 1.24091 0.90556 1.00936 1.11547 1.83748 1.06862 0.87964 1.71138 1.43176 1.09679 1.10468 1.72859 1.21177 0.95907 0.84313 0.97052 1.22401 0.97058 0.99707 1.02978 1.20776 0.88426 0.89583 0.71153 1.90447 1.24140 1.82415 1.41484 0.89282 0.87267 0.76617 0.92968 0.90805 0.89565 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.61 10.60 55.55 0.59 -19.02 15 2 C 0.05 1.21 5.50 -17.29 -0.10 1.12 15 3 Si 0.93 18.11 29.56 -169.99 -5.03 13.08 15 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 15 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 7 C -0.40 -10.36 9.26 -38.33 -0.36 -10.71 15 8 H 0.09 2.32 7.85 -52.48 -0.41 1.91 15 9 C -0.01 -0.27 6.14 -39.21 -0.24 -0.51 15 10 C -0.26 -6.94 9.96 -39.67 -0.40 -7.33 15 11 C -0.23 -5.76 5.77 -106.92 -0.62 -6.38 15 12 C -0.05 -1.16 7.19 -13.82 -0.10 -1.26 15 13 S 0.24 5.71 19.89 -107.50 -2.14 3.58 15 14 N -0.72 -12.65 5.96 -59.34 -0.35 -13.00 15 15 C 0.14 2.13 6.98 -3.60 -0.03 2.11 15 16 C -0.18 -3.05 6.21 -27.74 -0.17 -3.22 15 17 C 0.42 9.50 6.98 -32.22 -0.22 9.28 15 18 O -0.50 -12.75 17.70 5.42 0.10 -12.65 15 19 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 20 H 0.11 2.98 8.06 -52.49 -0.42 2.55 15 21 H 0.40 5.88 8.96 -40.82 -0.37 5.51 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 25 H 0.09 1.39 8.14 -51.93 -0.42 0.96 15 LS Contribution 234.76 15.07 3.54 3.54 Total: -1.00 -29.42 234.76 -7.54 -36.96 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -2.03 Total: 4.43 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.22 Total: -16.91 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.24 Total: -32.02 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.10 Total: -12.65 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 5.71 SS G_CDS: -2.14 Total: 3.58 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.42 -7.54 -36.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246881.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.428 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds