Wall clock time and date at job start Mon Mar 30 2020 03:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30951 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48499 * 109.47095 * 269.99424 * 3 2 1 5 5 H 1.48495 * 109.47141 * 29.99888 * 3 2 1 6 6 H 1.48508 * 109.46743 * 149.99954 * 3 2 1 7 7 C 1.39947 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.39874 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.37573 * 124.97911 * 180.02562 * 9 7 2 11 11 C 1.38644 * 113.73541 * 179.76690 * 10 9 7 12 12 C 1.40651 * 112.98518 * 0.70586 * 11 10 9 13 13 S 1.69808 * 111.01647 * 359.10735 * 12 11 10 14 14 N 1.38082 * 121.35299 * 178.76583 * 12 11 10 15 15 C 1.47352 * 116.21592 * 336.59971 * 14 12 11 16 16 C 1.52951 * 109.70986 * 51.19240 * 15 14 12 17 17 C 1.43178 * 126.59003 * 181.23711 * 11 10 9 18 18 O 1.21436 * 121.12881 * 355.68640 * 17 11 10 19 19 H 0.96996 * 120.00049 * 0.02562 * 1 2 3 20 20 H 1.07998 * 123.13382 * 359.80756 * 10 9 7 21 21 H 0.97002 * 121.89666 * 156.58430 * 14 12 11 22 22 H 1.09000 * 109.43183 * 291.12022 * 15 14 12 23 23 H 1.09002 * 109.39330 * 171.24266 * 15 14 12 24 24 H 1.08996 * 109.31660 * 185.91040 * 16 15 14 25 25 H 1.09001 * 109.31265 * 66.48265 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6179 0.0000 4 1 2.4910 2.0465 -1.4001 5 1 1.4408 2.6527 0.7000 6 1 3.5410 1.4403 0.7001 7 6 2.0093 -1.2119 0.0005 8 1 3.0894 -1.2118 0.0010 9 6 1.3100 -2.4233 0.0005 10 6 1.8919 -3.6699 0.0016 11 6 0.9780 -4.7124 0.0065 12 6 -0.3577 -4.2719 -0.0065 13 16 -0.4397 -2.5758 0.0002 14 7 -1.4091 -5.1667 -0.0294 15 6 -1.1116 -6.5071 -0.5642 16 6 0.1234 -7.0786 0.1339 17 6 1.2796 -6.1118 0.0334 18 8 2.4262 -6.5080 -0.0230 19 1 -0.4850 0.8400 -0.0004 20 1 2.9611 -3.8223 -0.0006 21 1 -2.2935 -4.9266 0.2888 22 1 -0.9225 -6.4364 -1.6354 23 1 -1.9637 -7.1640 -0.3891 24 1 0.4000 -8.0217 -0.3375 25 1 -0.1066 -7.2576 1.1842 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261246881.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:25 Heat of formation + Delta-G solvation = -48.392969 kcal Electronic energy + Delta-G solvation = -12711.972126 eV Core-core repulsion = 10394.014081 eV Total energy + Delta-G solvation = -2317.958044 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.69796 -37.94078 -36.73845 -34.97443 -31.70741 -30.51995 -27.00974 -24.83075 -23.85036 -21.66337 -19.78250 -18.74987 -18.31393 -17.24704 -16.44514 -16.10835 -15.59958 -15.54654 -14.79107 -14.59250 -14.24974 -13.47871 -13.29573 -13.03755 -12.89883 -12.67884 -12.47971 -12.04784 -11.95408 -11.38942 -11.19337 -10.50810 -10.22422 -8.87211 -8.77955 -8.45475 -6.17404 0.31656 1.06126 1.25298 1.40448 1.54488 1.63857 1.88513 2.22848 2.51197 2.91511 3.17634 3.60677 4.12810 4.31377 4.39017 4.66866 4.78766 5.00242 5.12748 5.23616 5.44606 5.66642 5.91169 6.20302 6.27159 6.58722 6.79462 6.86987 7.09427 8.19143 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.052003 B = 0.008815 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.299510 B = 3175.549075 C = 3678.291662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.020 3.980 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.441 4.441 8 H 0.081 0.919 9 C -0.044 4.044 10 C -0.297 4.297 11 C -0.280 4.280 12 C -0.014 4.014 13 S 0.262 5.738 14 N -0.707 5.707 15 C 0.138 3.862 16 C -0.171 4.171 17 C 0.403 3.597 18 O -0.547 6.547 19 H 0.307 0.693 20 H 0.079 0.921 21 H 0.417 0.583 22 H 0.052 0.948 23 H 0.134 0.866 24 H 0.114 0.886 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -3.364 -0.059 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.193 4.193 3 Si 0.824 3.176 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.189 1.189 7 C -0.477 4.477 8 H 0.099 0.901 9 C -0.163 4.163 10 C -0.323 4.323 11 C -0.297 4.297 12 C -0.236 4.236 13 S 0.520 5.480 14 N -0.346 5.346 15 C 0.012 3.988 16 C -0.209 4.209 17 C 0.289 3.711 18 O -0.432 6.432 19 H 0.120 0.880 20 H 0.098 0.902 21 H 0.255 0.745 22 H 0.070 0.930 23 H 0.152 0.848 24 H 0.132 0.868 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.030 -2.577 -0.142 9.391 hybrid contribution 1.785 -0.319 0.117 1.817 sum -7.245 -2.895 -0.025 7.802 Atomic orbital electron populations 1.68460 1.08260 1.31643 1.37955 1.26841 0.95917 1.04821 0.91727 0.84824 0.78512 0.74693 0.79598 1.18577 1.18184 1.18875 1.19156 0.95109 0.89804 1.43645 0.90117 1.21706 0.95840 0.96095 1.02680 1.19473 0.96918 0.91356 1.24564 1.18983 0.92651 0.95632 1.22410 1.24238 0.91134 1.01400 1.06866 1.83404 1.04325 0.88656 1.71622 1.43471 1.09161 1.10689 1.71284 1.21530 0.97316 0.83313 0.96597 1.22370 0.94790 0.98970 1.04780 1.21536 0.89722 0.89966 0.69889 1.90412 1.26290 1.82840 1.43704 0.87980 0.90246 0.74465 0.92991 0.84826 0.86799 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.53 10.60 21.84 0.23 -39.30 15 2 C 0.02 0.96 5.50 85.24 0.47 1.43 15 3 Si 1.00 36.82 29.56 68.60 2.03 38.85 15 4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 15 5 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 7 C -0.44 -24.03 9.26 23.08 0.21 -23.81 15 8 H 0.08 4.37 7.85 -2.91 -0.02 4.35 15 9 C -0.04 -2.45 6.14 22.51 0.14 -2.31 15 10 C -0.30 -16.99 9.96 22.21 0.22 -16.77 15 11 C -0.28 -14.16 5.77 -21.35 -0.12 -14.28 15 12 C -0.01 -0.59 7.19 84.30 0.61 0.01 15 13 S 0.26 12.25 19.89 -56.49 -1.12 11.13 15 14 N -0.71 -22.00 5.96 -341.65 -2.04 -24.04 15 15 C 0.14 3.45 6.98 86.20 0.60 4.05 15 16 C -0.17 -5.12 6.21 29.94 0.19 -4.94 15 17 C 0.40 18.40 6.98 27.04 0.19 18.59 15 18 O -0.55 -28.76 17.70 -3.52 -0.06 -28.83 15 19 H 0.31 12.91 8.30 -92.71 -0.77 12.14 15 20 H 0.08 4.80 8.06 -2.91 -0.02 4.78 15 21 H 0.42 10.28 8.96 -92.71 -0.83 9.45 15 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.13 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.11 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 Total: -1.00 -68.10 234.76 1.93 -66.17 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.40 Total: 14.06 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 2.50 Total: -38.03 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -1.80 Total: -63.34 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.06 Total: -28.83 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 12.25 SS G_CDS: -1.12 Total: 11.13 kcal Total: -68.10 1.93 -66.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246881.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.772 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds