Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86796 * 120.00337 * 2 1 4 4 H 1.48502 * 109.47361 * 270.00276 * 3 2 1 5 5 H 1.48501 * 109.46864 * 30.00259 * 3 2 1 6 6 H 1.48498 * 109.47287 * 150.00134 * 3 2 1 7 7 C 1.40536 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.39609 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.38495 * 125.06774 * 180.02562 * 9 7 2 11 11 C 1.36177 * 115.00134 * 179.97438 * 10 9 7 12 12 C 1.40449 * 113.69843 * 0.46892 * 11 10 9 13 13 S 1.75087 * 110.00282 * 359.35110 * 12 11 10 14 14 C 1.41351 * 122.19992 * 178.97610 * 12 11 10 15 15 O 1.21539 * 121.09020 * 176.15979 * 14 12 11 16 16 C 1.51197 * 117.81093 * 356.13309 * 14 12 11 17 17 C 1.52957 * 110.20838 * 31.42692 * 16 14 12 18 18 N 1.41066 * 126.84462 * 180.60129 * 11 10 9 19 19 H 0.97002 * 119.99851 * 359.97438 * 1 2 3 20 20 H 1.08005 * 122.49792 * 359.95138 * 10 9 7 21 21 H 1.08992 * 109.34845 * 271.19695 * 16 14 12 22 22 H 1.09003 * 109.34650 * 151.64836 * 16 14 12 23 23 H 1.09000 * 109.39234 * 66.35317 * 17 16 14 24 24 H 1.09006 * 109.38881 * 186.15525 * 17 16 14 25 25 H 0.97006 * 121.94346 * 335.83431 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0464 -1.4001 5 1 1.4368 2.6526 0.7001 6 1 3.5369 1.4400 0.7000 7 6 2.0079 -1.2171 -0.0005 8 1 3.0879 -1.2171 -0.0010 9 6 1.3099 -2.4262 -0.0005 10 6 1.8937 -3.6820 -0.0005 11 6 1.0172 -4.7242 0.0000 12 6 -0.3303 -4.3285 -0.0100 13 16 -0.4415 -2.5812 -0.0016 14 6 -1.3899 -5.2638 -0.0325 15 8 -2.5484 -4.9014 0.0288 16 6 -1.0346 -6.7298 -0.1360 17 6 0.3046 -6.9988 0.5522 18 7 1.3367 -6.0982 0.0120 19 1 -0.4850 0.8401 0.0004 20 1 2.9644 -3.8242 -0.0013 21 1 -0.9636 -7.0109 -1.1866 22 1 -1.8125 -7.3245 0.3429 23 1 0.2012 -6.8293 1.6240 24 1 0.6006 -8.0330 0.3763 25 1 2.1870 -6.4303 -0.3162 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261250242.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = -34.264087 kcal Electronic energy + Delta-G solvation = -12695.856570 eV Core-core repulsion = 10378.511200 eV Total energy + Delta-G solvation = -2317.345370 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.50080 -36.37218 -34.85076 -33.20115 -29.75839 -28.88564 -25.80155 -23.16354 -21.73372 -19.46596 -18.53271 -17.16329 -15.85292 -15.52960 -14.80534 -14.20291 -14.06174 -13.39618 -13.06106 -12.88256 -12.41060 -11.95480 -11.76513 -11.56119 -11.40212 -10.90004 -10.67733 -10.57006 -10.27905 -9.83817 -8.97068 -8.54323 -8.29805 -7.36942 -7.22383 -6.23108 -4.82171 2.09593 2.80331 2.80665 2.87189 3.51676 3.54425 3.57302 3.99003 4.34445 4.47894 4.85456 5.35257 5.61699 5.74874 6.00774 6.07459 6.39029 6.53213 6.69789 7.02988 7.21529 7.23943 7.56278 7.76250 7.91106 8.18331 8.30521 8.68415 9.14994 9.53329 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.053317 B = 0.008852 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.036904 B = 3162.376420 C = 3652.183501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.046 3.954 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.352 4.352 8 H 0.101 0.899 9 C 0.049 3.951 10 C -0.367 4.367 11 C 0.288 3.712 12 C -0.540 4.540 13 S 0.191 5.809 14 C 0.422 3.578 15 O -0.544 6.544 16 C -0.175 4.175 17 C 0.145 3.855 18 N -0.758 5.758 19 H 0.305 0.695 20 H 0.105 0.895 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -2.637 0.048 5.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.388 4.388 8 H 0.119 0.881 9 C -0.075 4.075 10 C -0.394 4.394 11 C 0.178 3.822 12 C -0.659 4.659 13 S 0.450 5.550 14 C 0.314 3.686 15 O -0.433 6.433 16 C -0.216 4.216 17 C 0.020 3.980 18 N -0.395 5.395 19 H 0.119 0.881 20 H 0.123 0.877 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.240 -1.548 0.155 2.727 hybrid contribution 2.053 -0.714 -0.189 2.181 sum 4.292 -2.262 -0.033 4.852 Atomic orbital electron populations 1.68761 1.08047 1.31771 1.28711 1.26471 0.95178 1.03220 0.93084 0.85726 0.80113 0.78002 0.79912 1.18629 1.19369 1.17871 1.19510 0.95899 0.88734 1.34640 0.88093 1.21927 0.97108 0.95152 0.93277 1.19067 0.97701 0.90527 1.32119 1.17691 0.91840 0.83070 0.89569 1.23834 0.95256 1.02163 1.44616 1.84513 1.01495 0.93141 1.75859 1.19304 0.87579 0.88719 0.73014 1.90455 1.22866 1.82991 1.46962 1.22361 0.98218 0.98766 1.02240 1.21091 0.87430 0.92566 0.96958 1.44531 1.18540 1.03398 1.73059 0.88138 0.87676 0.90014 0.90087 0.93126 0.91296 0.76946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.37 10.60 55.58 0.59 -16.78 15 2 C 0.05 1.02 5.50 -17.24 -0.09 0.92 15 3 Si 0.94 16.12 29.56 -169.99 -5.03 11.09 15 4 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 5 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 6 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 7 C -0.35 -8.34 9.28 -38.20 -0.35 -8.70 15 8 H 0.10 2.20 7.85 -52.49 -0.41 1.79 15 9 C 0.05 1.25 6.17 -38.98 -0.24 1.01 15 10 C -0.37 -8.94 10.12 -40.23 -0.41 -9.35 15 11 C 0.29 6.82 6.72 -83.51 -0.56 6.26 15 12 C -0.54 -14.02 6.29 -37.57 -0.24 -14.26 15 13 S 0.19 5.07 20.04 -107.50 -2.15 2.92 15 14 C 0.42 10.50 6.93 -32.88 -0.23 10.27 15 15 O -0.54 -15.09 17.80 5.33 0.09 -14.99 15 16 C -0.17 -3.28 6.24 -27.66 -0.17 -3.45 15 17 C 0.15 2.40 6.96 -3.66 -0.03 2.37 15 18 N -0.76 -14.21 6.09 -58.04 -0.35 -14.56 15 19 H 0.31 6.28 8.29 -40.82 -0.34 5.94 15 20 H 0.11 2.36 8.06 -52.48 -0.42 1.94 15 21 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.40 6.23 8.96 -40.82 -0.37 5.86 15 LS Contribution 235.36 15.07 3.55 3.55 Total: -1.00 -29.74 235.36 -7.65 -37.39 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.03 Total: 6.32 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.32 Total: -14.93 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.24 Total: -31.35 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.09 Total: -14.99 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -5.03 Total: 11.09 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -2.15 Total: 2.92 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.74 -7.65 -37.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261250242.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.125 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds