Wall clock time and date at job start Mon Mar 30 2020 03:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36487 * 123.27709 * 357.93709 * 3 2 1 5 5 S 1.70224 * 111.96536 * 180.28447 * 4 3 2 6 6 C 1.75481 * 92.88652 * 359.71909 * 5 4 3 7 7 C 1.39222 * 125.03378 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00261 * 173.21576 * 7 6 5 9 9 C 1.40609 * 119.99698 * 353.21208 * 7 6 5 10 10 N 1.30500 * 120.00207 * 6.55086 * 9 7 6 11 11 Si 1.86802 * 119.99798 * 186.54735 * 9 7 6 12 12 H 1.48502 * 109.47259 * 94.99072 * 11 9 7 13 13 H 1.48505 * 109.47245 * 214.98937 * 11 9 7 14 14 H 1.48501 * 109.47416 * 334.98990 * 11 9 7 15 15 C 1.39669 * 109.93448 * 359.97438 * 6 5 4 16 16 C 1.46523 * 124.11929 * 180.02562 * 15 6 5 17 17 O 1.21638 * 119.99939 * 89.99802 * 16 15 6 18 18 O 1.34928 * 119.99801 * 269.72433 * 16 15 6 19 19 H 1.07997 * 124.01829 * 0.02562 * 4 3 2 20 20 H 0.97006 * 119.99688 * 179.97438 * 10 9 7 21 21 H 0.96698 * 114.00471 * 0.28148 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3174 -1.1394 0.0411 5 16 4.9865 -0.8047 0.0369 6 6 4.7286 0.9298 -0.0305 7 6 5.7387 1.8873 -0.0623 8 1 5.4920 2.9278 -0.2138 9 6 7.0802 1.4997 0.1028 10 7 7.3916 0.2336 0.1577 11 14 8.4167 2.7972 0.2435 12 1 8.6900 3.0731 1.6768 13 1 9.6556 2.3047 -0.4107 14 1 7.9672 4.0454 -0.4238 15 6 3.3599 1.2074 -0.0487 16 6 2.7960 2.5586 -0.1038 17 8 2.5678 3.0790 -1.1793 18 8 2.5248 3.2235 1.0385 19 1 2.9010 -2.1352 0.0765 20 1 8.3172 -0.0337 0.2712 21 1 2.7398 2.7297 1.8416 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271719.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:48 Heat of formation + Delta-G solvation = -64.875088 kcal Electronic energy + Delta-G solvation = -12340.275086 eV Core-core repulsion = 9885.769229 eV Total energy + Delta-G solvation = -2454.505857 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.009 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.98966 -36.52423 -35.40946 -35.20647 -34.08617 -29.85416 -26.27902 -23.94200 -22.09309 -20.04466 -18.79978 -16.84604 -15.84661 -15.58932 -15.43815 -14.59999 -14.23997 -13.35225 -13.16504 -12.85471 -12.61362 -12.42056 -12.00655 -11.97591 -11.38477 -11.15961 -10.70730 -10.67927 -10.46163 -9.89041 -9.82425 -9.10939 -8.08267 -7.47918 -7.20287 -5.07453 2.01661 2.46607 2.75874 2.83376 2.98599 3.03555 3.11334 3.32937 3.47773 3.64635 4.18081 4.43211 4.68674 5.02838 5.77591 6.22434 6.41753 6.81476 7.03304 7.19753 7.58532 7.83052 8.03386 8.13049 8.20544 8.60772 9.37739 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.011480 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.008958 B = 2438.394063 C = 3155.780446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.285 3.715 3 C 0.020 3.980 4 C -0.351 4.351 5 S 0.243 5.757 6 C 0.052 3.948 7 C -0.373 4.373 8 H 0.101 0.899 9 C 0.058 3.942 10 N -0.766 5.766 11 Si 0.938 3.062 12 H -0.261 1.261 13 H -0.268 1.268 14 H -0.254 1.254 15 C -0.395 4.395 16 C 0.587 3.413 17 O -0.491 6.491 18 O -0.518 6.518 19 H 0.139 0.861 20 H 0.307 0.693 21 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -1.342 3.744 6.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.030 4.030 3 C 0.002 3.998 4 C -0.490 4.490 5 S 0.508 5.492 6 C -0.069 4.069 7 C -0.408 4.408 8 H 0.119 0.881 9 C -0.166 4.166 10 N -0.391 5.391 11 Si 0.760 3.240 12 H -0.185 1.185 13 H -0.193 1.193 14 H -0.177 1.177 15 C -0.404 4.404 16 C 0.428 3.572 17 O -0.377 6.377 18 O -0.326 6.326 19 H 0.157 0.843 20 H 0.120 0.880 21 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.800 -1.770 2.907 5.884 hybrid contribution -0.244 0.838 0.456 0.985 sum 4.556 -0.932 3.363 5.739 Atomic orbital electron populations 1.81086 1.12401 1.09139 1.11518 1.25888 0.92778 0.92150 0.92168 1.15554 0.82892 0.92822 1.08520 1.25525 1.04448 0.99668 1.19403 1.83741 0.94670 0.99111 1.71706 1.21561 0.92828 0.97056 0.95466 1.19316 0.89608 0.96001 1.35849 0.88118 1.26353 1.00989 0.97149 0.92145 1.68537 1.23034 1.16977 1.30574 0.85717 0.77981 0.80219 0.80034 1.18527 1.19277 1.17683 1.19079 0.92176 0.90354 1.38778 1.19687 0.71910 0.83537 0.82108 1.90758 1.49600 1.70871 1.26459 1.84827 1.79742 1.49496 1.18576 0.84290 0.87981 0.73584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.39 18.54 41.84 0.78 -9.61 14 2 C 0.29 6.24 15.17 -22.47 -0.34 5.89 14 3 C 0.02 0.42 5.85 -106.17 -0.62 -0.20 14 4 C -0.35 -7.00 10.71 30.10 0.32 -6.67 14 5 S 0.24 4.92 19.89 -107.50 -2.14 2.79 14 6 C 0.05 1.17 6.17 -38.68 -0.24 0.93 14 7 C -0.37 -8.25 8.96 -38.32 -0.34 -8.60 14 8 H 0.10 2.26 7.50 -52.49 -0.39 1.87 14 9 C 0.06 1.15 5.50 -17.22 -0.09 1.06 14 10 N -0.77 -15.23 10.63 55.58 0.59 -14.64 14 11 Si 0.94 15.28 29.57 -169.99 -5.03 10.25 14 12 H -0.26 -4.16 7.11 56.52 0.40 -3.76 14 13 H -0.27 -4.24 7.11 56.52 0.40 -3.84 14 14 H -0.25 -4.28 7.11 56.52 0.40 -3.88 14 15 C -0.40 -8.97 5.68 -103.60 -0.59 -9.56 14 16 C 0.59 13.69 6.93 34.07 0.24 13.93 14 17 O -0.49 -13.12 17.96 -19.37 -0.35 -13.46 14 18 O -0.52 -10.16 13.61 -41.12 -0.56 -10.72 14 19 H 0.14 2.46 8.06 -52.49 -0.42 2.04 14 20 H 0.31 5.38 8.29 -40.82 -0.34 5.05 14 21 H 0.41 5.91 8.79 45.56 0.40 6.31 14 LS Contribution 229.13 15.07 3.45 3.45 Total: -1.00 -26.92 229.13 -4.47 -31.39 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.45 Total: 3.78 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.67 Total: -3.22 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 1.37 Total: -24.26 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.91 Total: -24.19 kcal Atomic # 14 Polarization: 15.28 SS G_CDS: -5.03 Total: 10.25 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.14 Total: 2.79 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -26.92 -4.47 -31.39 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271719.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.488 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds