Wall clock time and date at job start Mon Mar 30 2020 03:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36487 * 123.27709 * 357.93709 * 3 2 1 5 5 S 1.70224 * 111.96536 * 180.28447 * 4 3 2 6 6 C 1.75481 * 92.88652 * 359.71909 * 5 4 3 7 7 C 1.39222 * 125.03378 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00261 * 173.21576 * 7 6 5 9 9 C 1.40609 * 119.99698 * 353.21208 * 7 6 5 10 10 N 1.30500 * 120.00207 * 6.55086 * 9 7 6 11 11 Si 1.86802 * 119.99798 * 186.54735 * 9 7 6 12 12 H 1.48502 * 109.47259 * 94.99072 * 11 9 7 13 13 H 1.48505 * 109.47245 * 214.98937 * 11 9 7 14 14 H 1.48501 * 109.47416 * 334.98990 * 11 9 7 15 15 C 1.39669 * 109.93448 * 359.97438 * 6 5 4 16 16 C 1.46523 * 124.11929 * 180.02562 * 15 6 5 17 17 O 1.21638 * 119.99939 * 89.99802 * 16 15 6 18 18 O 1.34928 * 119.99801 * 269.72433 * 16 15 6 19 19 H 1.07997 * 124.01829 * 0.02562 * 4 3 2 20 20 H 0.97006 * 119.99688 * 179.97438 * 10 9 7 21 21 H 0.96698 * 114.00471 * 0.28148 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3174 -1.1394 0.0411 5 16 4.9865 -0.8047 0.0369 6 6 4.7286 0.9298 -0.0305 7 6 5.7387 1.8873 -0.0623 8 1 5.4920 2.9278 -0.2138 9 6 7.0802 1.4997 0.1028 10 7 7.3916 0.2336 0.1577 11 14 8.4167 2.7972 0.2435 12 1 8.6900 3.0731 1.6768 13 1 9.6556 2.3047 -0.4107 14 1 7.9672 4.0454 -0.4238 15 6 3.3599 1.2074 -0.0487 16 6 2.7960 2.5586 -0.1038 17 8 2.5678 3.0790 -1.1793 18 8 2.5248 3.2235 1.0385 19 1 2.9010 -2.1352 0.0765 20 1 8.3172 -0.0337 0.2712 21 1 2.7398 2.7297 1.8416 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261271719.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:48 Heat of formation + Delta-G solvation = -81.249675 kcal Electronic energy + Delta-G solvation = -12340.985142 eV Core-core repulsion = 9885.769229 eV Total energy + Delta-G solvation = -2455.215913 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.009 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76023 -38.23387 -37.18840 -36.87915 -35.71150 -31.49851 -27.95429 -25.60984 -23.81613 -21.71286 -20.44825 -18.52048 -17.49220 -17.21858 -17.21195 -16.17953 -15.92166 -14.95078 -14.87203 -14.56780 -14.21200 -14.04347 -13.68196 -13.51238 -12.99637 -12.63859 -12.43885 -12.21700 -11.97140 -11.56805 -11.35989 -10.85735 -9.73808 -9.01191 -8.84559 -6.73183 0.38093 0.91520 1.28189 1.38636 1.42883 1.57495 1.61223 1.64560 1.92556 2.17017 2.49852 2.81068 3.02628 3.34341 4.21022 4.65520 4.87238 5.15198 5.39008 5.53389 5.93613 6.15687 6.41021 6.48293 6.50806 6.92178 7.88680 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.011480 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.008958 B = 2438.394063 C = 3155.780446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.293 3.707 3 C 0.002 3.998 4 C -0.334 4.334 5 S 0.270 5.730 6 C 0.027 3.973 7 C -0.395 4.395 8 H 0.087 0.913 9 C 0.033 3.967 10 N -0.775 5.775 11 Si 1.000 3.000 12 H -0.251 1.251 13 H -0.255 1.255 14 H -0.268 1.268 15 C -0.416 4.416 16 C 0.591 3.409 17 O -0.536 6.536 18 O -0.511 6.511 19 H 0.165 0.835 20 H 0.321 0.679 21 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -2.022 4.417 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.022 4.022 3 C -0.015 4.015 4 C -0.474 4.474 5 S 0.535 5.465 6 C -0.094 4.094 7 C -0.430 4.430 8 H 0.105 0.895 9 C -0.190 4.190 10 N -0.401 5.401 11 Si 0.819 3.181 12 H -0.175 1.175 13 H -0.179 1.179 14 H -0.192 1.192 15 C -0.425 4.425 16 C 0.434 3.566 17 O -0.426 6.426 18 O -0.322 6.322 19 H 0.183 0.817 20 H 0.135 0.865 21 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 6.222 -2.486 3.626 7.618 hybrid contribution -0.630 0.988 0.286 1.206 sum 5.592 -1.499 3.912 6.987 Atomic orbital electron populations 1.81083 1.12727 1.09575 1.12318 1.25933 0.92780 0.91758 0.91713 1.15584 0.82737 0.93054 1.10159 1.25879 1.04463 1.00383 1.16630 1.83556 0.94430 0.97224 1.71289 1.21839 0.92921 0.98697 0.95936 1.19445 0.90953 0.95529 1.37050 0.89466 1.27002 1.01745 0.98964 0.91304 1.68469 1.24502 1.17791 1.29343 0.84842 0.75757 0.77235 0.80299 1.17538 1.17862 1.19166 1.19102 0.92570 0.90266 1.40517 1.19857 0.70829 0.83702 0.82230 1.90720 1.51715 1.71878 1.28279 1.84761 1.79033 1.49572 1.18821 0.81715 0.86458 0.71044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.13 18.54 19.01 0.35 -20.78 14 2 C 0.29 12.57 15.17 88.33 1.34 13.91 14 3 C 0.00 0.09 5.85 -20.87 -0.12 -0.03 14 4 C -0.33 -12.64 10.71 67.41 0.72 -11.91 14 5 S 0.27 10.48 19.89 -56.49 -1.12 9.36 14 6 C 0.03 1.19 6.17 22.85 0.14 1.33 14 7 C -0.39 -17.39 8.96 23.09 0.21 -17.18 14 8 H 0.09 3.98 7.50 -2.91 -0.02 3.96 14 9 C 0.03 1.26 5.50 85.47 0.47 1.73 14 10 N -0.78 -29.27 10.63 21.94 0.23 -29.04 14 11 Si 1.00 29.72 29.57 68.60 2.03 31.75 14 12 H -0.25 -7.09 7.11 99.48 0.71 -6.38 14 13 H -0.25 -7.02 7.11 99.48 0.71 -6.31 14 14 H -0.27 -8.52 7.11 99.48 0.71 -7.81 14 15 C -0.42 -18.84 5.68 -19.20 -0.11 -18.95 14 16 C 0.59 27.85 6.93 69.98 0.49 28.34 14 17 O -0.54 -29.30 17.96 19.38 0.35 -28.95 14 18 O -0.51 -19.91 13.61 -58.43 -0.80 -20.71 14 19 H 0.17 5.31 8.06 -2.91 -0.02 5.29 14 20 H 0.32 10.43 8.29 -92.70 -0.77 9.66 14 21 H 0.43 12.10 8.79 -74.06 -0.65 11.45 14 Total: -1.00 -56.10 229.13 4.83 -51.27 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.66 Total: 9.85 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 3.13 Total: -2.76 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.59 Total: -49.81 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.45 Total: -49.66 kcal Atomic # 14 Polarization: 29.72 SS G_CDS: 2.03 Total: 31.75 kcal Atomic # 16 Polarization: 10.48 SS G_CDS: -1.12 Total: 9.36 kcal Total: -56.10 4.83 -51.27 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271719.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.982 kcal (2) G-P(sol) polarization free energy of solvation -56.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds