Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30993 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48508 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46775 * 299.99459 * 3 2 1 6 6 H 1.48494 * 109.47156 * 60.00123 * 3 2 1 7 7 C 1.39934 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.39868 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.40238 * 126.88628 * 359.97438 * 9 7 2 11 11 N 1.31969 * 108.07580 * 180.02562 * 10 9 7 12 12 C 1.33366 * 109.95608 * 359.97438 * 11 10 9 13 13 C 1.40383 * 132.17375 * 179.97438 * 12 11 10 14 14 C 1.36521 * 119.25453 * 179.73142 * 13 12 11 15 15 C 1.40048 * 120.14753 * 0.54719 * 14 13 12 16 16 Cl 1.73599 * 119.63291 * 179.74307 * 15 14 13 17 17 N 1.30887 * 120.73952 * 359.45897 * 15 14 13 18 18 N 1.37088 * 108.78850 * 0.02562 * 12 11 10 19 19 H 0.96999 * 119.99680 * 0.02562 * 1 2 3 20 20 H 1.07998 * 125.95765 * 0.03593 * 10 9 7 21 21 H 1.07996 * 120.37250 * 359.97438 * 13 12 11 22 22 H 1.08006 * 119.92957 * 180.26645 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.7040 1.3464 0.0006 5 1 1.8852 2.3963 -1.2126 6 1 1.8852 2.3964 1.2125 7 6 2.0096 -1.2119 0.0005 8 1 3.0896 -1.2119 0.0010 9 6 1.3102 -2.4232 0.0016 10 6 -0.0820 -2.5914 0.0028 11 7 -0.3381 -3.8860 0.0041 12 6 0.8033 -4.5757 0.0033 13 6 1.0719 -5.9536 0.0046 14 6 2.3686 -6.3806 -0.0023 15 6 3.4155 -5.4503 0.0011 16 17 5.0594 -6.0081 -0.0010 17 7 3.1683 -4.1650 0.0002 18 7 1.8525 -3.6933 0.0020 19 1 -0.4849 0.8401 -0.0004 20 1 -0.8164 -1.7995 0.0024 21 1 0.2618 -6.6678 0.0070 22 1 2.5877 -7.4382 -0.0057 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261273454.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = 80.834773 kcal Electronic energy + Delta-G solvation = -12449.618181 eV Core-core repulsion = 10031.679822 eV Total energy + Delta-G solvation = -2417.938359 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.56724 -38.88158 -37.48210 -35.81752 -34.14622 -31.58150 -30.63380 -27.42785 -24.87153 -23.50386 -22.16601 -19.82316 -18.34790 -18.25872 -16.80201 -16.55485 -16.54342 -15.00259 -14.52077 -14.48571 -14.30534 -13.93791 -13.32072 -13.04080 -13.02243 -12.52006 -12.25324 -12.06157 -11.85779 -11.43208 -11.18504 -10.56435 -9.94803 -9.15502 -8.81409 -6.45562 -0.30364 0.18063 0.52077 1.38907 1.40578 1.56153 1.86466 2.05983 2.18906 2.69552 3.09673 3.62880 3.82109 4.01716 4.52081 4.83977 4.95345 5.01361 5.09247 5.26413 5.66697 5.76364 6.18447 6.40855 6.63848 7.06872 7.35413 8.17209 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.009170 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.826800 B = 3052.737787 C = 3851.721604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.035 3.965 3 Si 1.013 2.987 4 H -0.264 1.264 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.445 4.445 8 H 0.078 0.922 9 C 0.188 3.812 10 C -0.084 4.084 11 N -0.459 5.459 12 C 0.005 3.995 13 C 0.042 3.958 14 C -0.239 4.239 15 C 0.198 3.802 16 Cl 0.018 6.982 17 N -0.307 5.307 18 N -0.334 5.334 19 H 0.301 0.699 20 H 0.203 0.797 21 H 0.184 0.816 22 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -5.689 -0.003 7.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.480 4.480 8 H 0.097 0.903 9 C 0.073 3.927 10 C -0.244 4.244 11 N -0.179 5.179 12 C -0.228 4.228 13 C 0.016 3.984 14 C -0.265 4.265 15 C -0.003 4.003 16 Cl 0.046 6.954 17 N -0.119 5.119 18 N -0.118 5.118 19 H 0.113 0.887 20 H 0.219 0.781 21 H 0.201 0.799 22 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.954 -5.198 -0.002 7.181 hybrid contribution 0.712 0.332 0.001 0.786 sum 5.666 -4.866 -0.001 7.469 Atomic orbital electron populations 1.69546 1.08752 1.31575 1.33831 1.26862 0.95949 1.04395 0.91014 0.84695 0.78389 0.74125 0.79676 1.18761 1.17991 1.18004 1.18915 0.95068 0.88923 1.45049 0.90338 1.19501 0.92565 0.81746 0.98853 1.23938 0.93350 0.91953 1.15204 1.69820 1.25501 1.06332 1.16275 1.21095 0.84214 0.93759 1.23702 1.20707 0.98317 0.90020 0.89399 1.21186 0.89402 1.01641 1.14228 1.22896 0.89916 0.90469 0.97046 1.98383 1.14538 1.86147 1.96369 1.74607 1.00456 1.16104 1.20743 1.46196 1.00632 1.07474 1.57481 0.88679 0.78114 0.79911 0.79275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.59 10.31 21.84 0.23 -39.36 14 2 C 0.04 1.69 5.50 85.23 0.47 2.16 14 3 Si 1.01 36.46 29.56 68.60 2.03 38.49 14 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 14 5 H -0.26 -8.61 7.11 99.48 0.71 -7.91 14 6 H -0.26 -8.62 7.11 99.48 0.71 -7.91 14 7 C -0.45 -24.35 9.44 23.08 0.22 -24.14 14 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 14 9 C 0.19 10.77 6.94 39.04 0.27 11.05 14 10 C -0.08 -4.76 10.84 85.16 0.92 -3.84 14 11 N -0.46 -24.77 11.23 -191.33 -2.15 -26.92 14 12 C 0.00 0.24 7.85 133.72 1.05 1.29 14 13 C 0.04 1.56 10.11 22.39 0.23 1.79 14 14 C -0.24 -7.71 9.82 22.31 0.22 -7.49 14 15 C 0.20 7.48 7.38 85.27 0.63 8.11 14 16 Cl 0.02 0.51 29.12 -2.72 -0.08 0.43 14 17 N -0.31 -14.79 11.91 -49.64 -0.59 -15.38 14 18 N -0.33 -18.05 4.08 -184.87 -0.75 -18.80 14 19 H 0.30 12.83 8.30 -92.71 -0.77 12.06 14 20 H 0.20 11.25 5.73 -2.91 -0.02 11.23 14 21 H 0.18 5.18 8.06 -2.91 -0.02 5.16 14 22 H 0.19 4.10 8.06 -2.91 -0.02 4.08 14 Total: -1.00 -64.48 223.40 3.95 -60.53 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.26 Total: 12.07 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.00 Total: -11.07 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.27 Total: -100.46 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -64.48 3.95 -60.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273454.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.366 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds