Wall clock time and date at job start Mon Mar 30 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47506 * 2 1 4 4 C 1.50701 * 109.46934 * 120.00143 * 2 1 3 5 5 N 1.30839 * 125.89492 * 299.96741 * 4 2 1 6 6 N 1.40083 * 108.20566 * 180.02562 * 5 4 2 7 7 C 1.46504 * 126.03934 * 180.02562 * 6 5 4 8 8 C 1.34948 * 107.92650 * 359.76331 * 6 5 4 9 9 C 1.35318 * 107.74261 * 0.38485 * 8 6 5 10 10 C 1.50706 * 126.04006 * 179.87103 * 9 8 6 11 11 H 1.09000 * 109.47318 * 179.68927 * 10 9 8 12 12 C 1.53002 * 109.46925 * 59.69693 * 10 9 8 13 13 C 1.50698 * 109.47294 * 299.69887 * 10 9 8 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99580 * 17 15 13 21 21 H 1.09002 * 109.46838 * 60.00399 * 1 2 3 22 22 H 1.09000 * 109.47699 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47441 * 300.00438 * 1 2 3 24 24 H 1.09001 * 109.47441 * 239.99562 * 2 1 3 25 25 H 1.08996 * 109.47488 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46746 * 299.99658 * 3 2 1 27 27 H 1.09001 * 109.47653 * 59.99365 * 3 2 1 28 28 H 1.08996 * 109.46956 * 89.97454 * 7 6 5 29 29 H 1.09001 * 109.47231 * 209.97608 * 7 6 5 30 30 H 1.09001 * 109.46884 * 329.97372 * 7 6 5 31 31 H 1.08001 * 126.12938 * 180.24109 * 8 6 5 32 32 H 1.08992 * 109.47060 * 179.97438 * 12 10 9 33 33 H 1.09004 * 109.46930 * 299.99901 * 12 10 9 34 34 H 1.09004 * 109.47059 * 59.99503 * 12 10 9 35 35 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7887 -0.3651 2.4688 6 7 2.4345 -1.2779 3.3127 7 6 2.4197 -1.2568 4.7775 8 6 3.0679 -2.1834 2.5381 9 6 2.8397 -1.8524 1.2461 10 6 3.3587 -2.5879 0.0374 11 1 3.0075 -2.0926 -0.8679 12 6 2.8485 -4.0301 0.0601 13 6 4.8655 -2.5877 0.0579 14 1 5.3945 -2.1031 0.8653 15 6 5.5688 -3.2053 -0.9545 16 7 4.9246 -3.7950 -1.9378 17 14 7.4366 -3.2045 -0.9294 18 1 7.9225 -4.4023 -0.1982 19 1 7.9504 -3.2327 -2.3224 20 1 7.9220 -1.9778 -0.2476 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.5769 -1.8447 5.1408 29 1 3.3493 -1.6816 5.1564 30 1 2.3221 -0.2283 5.1251 31 1 3.6539 -3.0208 2.8870 32 1 3.2235 -4.5619 -0.8143 33 1 3.1996 -4.5255 0.9654 34 1 1.7586 -4.0302 0.0453 35 1 5.4195 -4.2298 -2.6498 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:29 Heat of formation + Delta-G solvation = 38.037221 kcal Electronic energy + Delta-G solvation = -15503.724568 eV Core-core repulsion = 13116.146398 eV Total energy + Delta-G solvation = -2387.578170 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.03381 -36.75860 -36.12947 -33.43283 -32.43823 -29.57895 -27.95037 -27.29655 -27.06097 -23.43522 -23.24329 -20.74134 -19.66503 -18.07837 -17.55976 -16.44590 -16.15944 -15.57361 -15.30832 -14.72055 -14.39889 -14.22194 -13.83581 -13.57362 -13.36332 -13.19031 -12.92504 -12.80721 -12.63200 -12.38809 -12.17989 -12.14202 -12.00725 -11.73800 -11.69338 -10.93014 -10.88497 -10.37809 -9.91785 -8.90929 -8.00760 -6.13739 1.11680 1.42927 1.44513 1.53991 1.86808 2.08804 2.49932 3.25437 3.71756 3.97661 4.20746 4.26373 4.36257 4.49739 4.61672 4.69884 4.78684 4.84696 4.85529 4.97219 5.00077 5.12134 5.14521 5.27787 5.32607 5.40074 5.43253 5.50027 5.68099 5.97100 6.04914 6.18613 6.40101 6.48208 6.94113 6.99397 7.53249 9.02842 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.009394 C = 0.008145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.725838 B = 2979.818869 C = 3437.010837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 C -0.129 4.129 4 C 0.064 3.936 5 N -0.320 5.320 6 N -0.388 5.388 7 C 0.100 3.900 8 C 0.043 3.957 9 C -0.214 4.214 10 C 0.112 3.888 11 H 0.005 0.995 12 C -0.117 4.117 13 C -0.512 4.512 14 H 0.044 0.956 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.949 3.051 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 H 0.080 0.920 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.179 0.821 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.017 0.983 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 5.167 8.630 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.041 4.041 3 C -0.187 4.187 4 C -0.101 4.101 5 N -0.143 5.143 6 N -0.172 5.172 7 C -0.040 4.040 8 C -0.101 4.101 9 C -0.225 4.225 10 C 0.092 3.908 11 H 0.023 0.977 12 C -0.175 4.175 13 C -0.551 4.551 14 H 0.063 0.937 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.775 3.225 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.099 0.901 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.196 0.804 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.138 5.894 9.446 12.713 hybrid contribution 1.595 -0.947 -0.657 1.968 sum -4.543 4.947 8.789 11.061 Atomic orbital electron populations 1.21694 0.92673 1.01480 1.02674 1.19648 0.96841 0.95808 0.91829 1.21689 1.00142 0.94198 1.02627 1.22399 0.98021 0.95873 0.93781 1.76949 1.21362 1.15389 1.00610 1.48607 1.39931 1.21230 1.07408 1.22064 1.04661 1.04951 0.72290 1.22315 0.99983 0.96783 0.91062 1.20610 1.05621 1.00186 0.96066 1.17000 0.93426 0.91229 0.89136 0.97674 1.21602 0.96039 0.99178 1.00699 1.21413 0.92089 1.33991 1.07565 0.93725 1.25660 1.02169 0.95312 0.95241 1.70011 1.36381 1.37282 1.12023 0.85697 0.81265 0.78361 0.77149 1.19993 1.21010 1.19927 0.90104 0.93807 0.92377 0.91048 0.94428 0.90093 0.92331 0.89788 0.87770 0.88993 0.80429 0.92385 0.95229 0.96430 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.17 71.98 0.66 -3.12 16 2 C -0.02 -0.75 3.30 -11.54 -0.04 -0.79 16 3 C -0.13 -4.05 9.18 71.98 0.66 -3.38 16 4 C 0.06 2.68 5.73 43.10 0.25 2.93 16 5 N -0.32 -12.47 12.58 -47.38 -0.60 -13.06 16 6 N -0.39 -13.50 4.01 -369.56 -1.48 -14.99 16 7 C 0.10 2.18 11.47 127.77 1.47 3.65 16 8 C 0.04 1.71 10.87 83.54 0.91 2.62 16 9 C -0.21 -9.74 4.78 -20.14 -0.10 -9.83 16 10 C 0.11 5.78 2.63 -12.28 -0.03 5.75 16 11 H 0.01 0.29 6.49 -2.39 -0.02 0.28 16 12 C -0.12 -5.82 8.84 71.98 0.64 -5.18 16 13 C -0.51 -28.45 8.40 25.60 0.22 -28.23 16 14 H 0.04 2.49 7.72 -2.91 -0.02 2.47 16 15 C 0.01 0.79 5.30 84.65 0.45 1.24 16 16 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 17 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 2.88 6.49 -2.39 -0.02 2.86 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.18 6.35 8.06 -2.91 -0.02 6.32 16 32 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 33 H 0.03 1.37 8.00 -2.38 -0.02 1.35 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -65.37 290.99 6.31 -59.06 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.05 Total: 10.14 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 5.08 Total: -34.36 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.84 Total: -80.70 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.37 6.31 -59.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.094 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds