Wall clock time and date at job start Mon Mar 30 2020 03:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48505 * 109.46906 * 90.00643 * 3 2 1 5 5 H 1.48501 * 109.46968 * 210.00321 * 3 2 1 6 6 H 1.48498 * 109.47357 * 330.00397 * 3 2 1 7 7 C 1.37882 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99723 * 180.83139 * 7 2 1 9 9 C 1.50697 * 120.00094 * 0.82471 * 7 2 1 10 10 C 1.53001 * 109.47185 * 299.87779 * 9 7 2 11 11 C 1.54265 * 110.03399 * 304.27123 * 10 9 7 12 12 C 1.54888 * 104.19780 * 217.10661 * 11 10 9 13 13 C 1.54891 * 102.74685 * 37.94340 * 12 11 10 14 14 C 1.53878 * 110.03035 * 187.10664 * 10 9 7 15 15 C 1.52999 * 109.46972 * 59.87591 * 9 7 2 16 16 C 1.54265 * 110.03112 * 161.93261 * 15 9 7 17 17 C 1.54887 * 104.19697 * 217.10630 * 16 15 9 18 18 C 1.54890 * 102.74930 * 37.94683 * 17 16 15 19 19 C 1.53876 * 110.03095 * 44.77274 * 15 9 7 20 20 H 0.97006 * 119.99949 * 174.30363 * 1 2 3 21 21 H 1.08996 * 109.46874 * 179.87717 * 9 7 2 22 22 H 1.08994 * 110.01462 * 65.71667 * 10 9 7 23 23 H 1.09003 * 110.48708 * 335.78724 * 11 10 9 24 24 H 1.08993 * 110.48454 * 98.42224 * 11 10 9 25 25 H 1.09002 * 110.75796 * 279.62954 * 12 11 10 26 26 H 1.08995 * 110.91367 * 156.32692 * 12 11 10 27 27 H 1.08999 * 110.48621 * 203.38345 * 13 12 11 28 28 H 1.09001 * 110.60142 * 80.79098 * 13 12 11 29 29 H 1.09003 * 110.02786 * 238.56962 * 14 10 9 30 30 H 1.09002 * 110.03165 * 359.94672 * 14 10 9 31 31 H 1.08995 * 110.02034 * 283.37854 * 15 9 7 32 32 H 1.08997 * 110.49029 * 335.78889 * 16 15 9 33 33 H 1.08999 * 110.48357 * 98.43209 * 16 15 9 34 34 H 1.09000 * 110.76063 * 279.62637 * 17 16 15 35 35 H 1.09008 * 110.91681 * 156.33074 * 17 16 15 36 36 H 1.09004 * 110.48597 * 203.37954 * 18 17 16 37 37 H 1.08998 * 110.60057 * 80.78608 * 18 17 16 38 38 H 1.09007 * 110.02885 * 238.56742 * 19 15 9 39 39 H 1.08999 * 110.03490 * 359.94333 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 0.0130 9 6 1.2512 -2.4991 -0.0199 10 6 0.3583 -2.5910 1.2192 11 6 1.2062 -2.4143 2.4958 12 6 0.5685 -3.3922 3.5137 13 6 0.2011 -4.6116 2.6321 14 6 -0.2808 -3.9881 1.3059 15 6 0.3848 -2.5692 -1.2790 16 6 -0.0297 -4.0293 -1.5547 17 6 0.0071 -4.1497 -3.0984 18 6 1.2432 -3.2972 -3.4784 19 6 1.1942 -2.1037 -2.5022 20 1 -0.4850 -0.8360 -0.0834 21 1 1.9595 -3.3275 -0.0196 22 1 -0.4181 -1.8272 1.1770 23 1 2.2444 -2.6858 2.3048 24 1 1.1398 -1.3888 2.8588 25 1 -0.3246 -2.9560 3.9612 26 1 1.2862 -3.6747 4.2839 27 1 -0.5990 -5.1895 3.0947 28 1 1.0755 -5.2399 2.4627 29 1 -1.3674 -3.9022 1.3067 30 1 0.0444 -4.6003 0.4647 31 1 -0.5007 -1.9454 -1.1579 32 1 0.6813 -4.7199 -1.1012 33 1 -1.0364 -4.2170 -1.1813 34 1 -0.8990 -3.7347 -3.5400 35 1 0.1441 -5.1868 -3.4048 36 1 1.1653 -2.9506 -4.5090 37 1 2.1609 -3.8681 -3.3372 38 1 0.7008 -1.2545 -2.9752 39 1 2.2038 -1.8270 -2.1987 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:57 Heat of formation + Delta-G solvation = -29.549850 kcal Electronic energy + Delta-G solvation = -16582.588177 eV Core-core repulsion = 14295.619555 eV Total energy + Delta-G solvation = -2286.968622 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78917 -36.40123 -33.47150 -29.94733 -28.36182 -27.58007 -26.71930 -25.11064 -22.21651 -20.18015 -19.73101 -18.37398 -18.34291 -17.01577 -15.18778 -14.75803 -14.39227 -13.86020 -13.73972 -12.80092 -12.52280 -12.33773 -12.18809 -11.93076 -11.16511 -10.84522 -10.68203 -10.41323 -10.34957 -10.24785 -10.20720 -10.12697 -10.01814 -9.98065 -9.94968 -9.73010 -9.41592 -9.01272 -8.89365 -8.21956 -8.10699 -6.08159 -3.89815 3.47400 3.50048 3.65152 4.60428 5.36231 5.40140 5.43448 5.50251 5.51429 5.54920 5.59730 6.11697 6.18539 6.22997 6.24206 6.26016 6.34653 6.45190 6.45556 6.47681 6.52926 6.57598 6.62927 6.64329 6.74265 6.90884 6.91584 6.97678 7.02764 7.06487 7.27847 7.42732 7.48528 7.52256 7.77890 7.79740 8.39626 8.57214 9.06225 9.78722 11.17251 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.015752 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.221925 B = 1777.147195 C = 3071.254835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.031 3.969 3 Si 1.054 2.946 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.581 4.581 8 H 0.042 0.958 9 C 0.047 3.953 10 C -0.090 4.090 11 C -0.090 4.090 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.102 4.102 20 H 0.280 0.720 21 H 0.021 0.979 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -6.947 -0.352 6.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.174 4.174 3 Si 0.884 3.116 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.619 4.619 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.109 4.109 11 C -0.128 4.128 12 C -0.168 4.168 13 C -0.159 4.159 14 C -0.175 4.175 15 C -0.104 4.104 16 C -0.159 4.159 17 C -0.164 4.164 18 C -0.165 4.165 19 C -0.139 4.139 20 H 0.097 0.903 21 H 0.040 0.960 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.162 -5.293 -0.286 5.304 hybrid contribution 0.159 -1.576 -0.056 1.585 sum -0.002 -6.869 -0.342 6.878 Atomic orbital electron populations 1.70817 1.06854 1.32105 1.46247 1.25436 0.96476 1.01635 0.93829 0.83763 0.74924 0.76262 0.76640 1.21738 1.21704 1.21297 1.21824 0.93577 0.91793 1.54690 0.93971 1.19045 0.92586 0.96368 0.89137 1.21976 0.98466 0.94055 0.96370 1.22080 0.98888 0.97636 0.94190 1.22576 0.99709 0.96856 0.97675 1.22322 0.99572 0.97212 0.96776 1.22674 0.99028 0.98876 0.96890 1.21944 0.99236 0.92498 0.96745 1.22728 0.99858 0.99149 0.94151 1.22522 0.98176 0.98394 0.97278 1.22426 0.97310 0.98061 0.98663 1.22062 1.02398 0.95207 0.94238 0.90278 0.96040 0.90505 0.92400 0.92643 0.92614 0.93075 0.93340 0.92617 0.93748 0.91060 0.91292 0.92255 0.92991 0.92460 0.93159 0.93302 0.92713 0.93746 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 12.71 55.43 0.70 -25.26 16 2 C 0.03 0.83 5.05 -17.82 -0.09 0.74 16 3 Si 1.05 24.79 29.90 -169.99 -5.08 19.71 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.58 -15.22 5.79 -34.44 -0.20 -15.42 16 8 H 0.04 1.14 7.81 -52.49 -0.41 0.73 16 9 C 0.05 1.11 1.25 -91.77 -0.12 1.00 16 10 C -0.09 -1.98 2.14 -89.50 -0.19 -2.18 16 11 C -0.09 -1.91 5.57 -25.07 -0.14 -2.05 16 12 C -0.13 -2.29 6.91 -24.74 -0.17 -2.46 16 13 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 14 C -0.14 -2.58 5.40 -25.61 -0.14 -2.72 16 15 C -0.08 -1.86 2.01 -89.50 -0.18 -2.04 16 16 C -0.12 -2.24 4.38 -25.07 -0.11 -2.35 16 17 C -0.13 -2.09 6.91 -24.74 -0.17 -2.26 16 18 C -0.13 -2.24 6.83 -25.07 -0.17 -2.41 16 19 C -0.10 -2.18 5.85 -25.61 -0.15 -2.33 16 20 H 0.28 7.72 3.03 -40.82 -0.12 7.60 16 21 H 0.02 0.51 7.72 -51.93 -0.40 0.11 16 22 H 0.08 1.93 5.44 -51.93 -0.28 1.65 16 23 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 24 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.30 4.18 -51.93 -0.22 1.09 16 31 H 0.07 1.69 5.62 -51.93 -0.29 1.40 16 32 H 0.06 1.08 6.31 -51.93 -0.33 0.75 16 33 H 0.05 0.92 7.50 -51.93 -0.39 0.53 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.87 6.39 -51.93 -0.33 1.53 16 LS Contribution 280.16 15.07 4.22 4.22 Total: -1.00 -26.75 280.16 -8.78 -35.53 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.62 Total: 2.48 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: -2.00 Total: -36.68 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.70 Total: -25.26 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.75 -8.78 -35.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.978 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds