Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48505 * 109.46906 * 90.00643 * 3 2 1 5 5 H 1.48501 * 109.46968 * 210.00321 * 3 2 1 6 6 H 1.48498 * 109.47357 * 330.00397 * 3 2 1 7 7 C 1.37882 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99723 * 180.83139 * 7 2 1 9 9 C 1.50697 * 120.00094 * 0.82471 * 7 2 1 10 10 C 1.53001 * 109.47185 * 299.87779 * 9 7 2 11 11 C 1.54265 * 110.03399 * 304.27123 * 10 9 7 12 12 C 1.54888 * 104.19780 * 217.10661 * 11 10 9 13 13 C 1.54891 * 102.74685 * 37.94340 * 12 11 10 14 14 C 1.53878 * 110.03035 * 187.10664 * 10 9 7 15 15 C 1.52999 * 109.46972 * 59.87591 * 9 7 2 16 16 C 1.54265 * 110.03112 * 161.93261 * 15 9 7 17 17 C 1.54887 * 104.19697 * 217.10630 * 16 15 9 18 18 C 1.54890 * 102.74930 * 37.94683 * 17 16 15 19 19 C 1.53876 * 110.03095 * 44.77274 * 15 9 7 20 20 H 0.97006 * 119.99949 * 174.30363 * 1 2 3 21 21 H 1.08996 * 109.46874 * 179.87717 * 9 7 2 22 22 H 1.08994 * 110.01462 * 65.71667 * 10 9 7 23 23 H 1.09003 * 110.48708 * 335.78724 * 11 10 9 24 24 H 1.08993 * 110.48454 * 98.42224 * 11 10 9 25 25 H 1.09002 * 110.75796 * 279.62954 * 12 11 10 26 26 H 1.08995 * 110.91367 * 156.32692 * 12 11 10 27 27 H 1.08999 * 110.48621 * 203.38345 * 13 12 11 28 28 H 1.09001 * 110.60142 * 80.79098 * 13 12 11 29 29 H 1.09003 * 110.02786 * 238.56962 * 14 10 9 30 30 H 1.09002 * 110.03165 * 359.94672 * 14 10 9 31 31 H 1.08995 * 110.02034 * 283.37854 * 15 9 7 32 32 H 1.08997 * 110.49029 * 335.78889 * 16 15 9 33 33 H 1.08999 * 110.48357 * 98.43209 * 16 15 9 34 34 H 1.09000 * 110.76063 * 279.62637 * 17 16 15 35 35 H 1.09008 * 110.91681 * 156.33074 * 17 16 15 36 36 H 1.09004 * 110.48597 * 203.37954 * 18 17 16 37 37 H 1.08998 * 110.60057 * 80.78608 * 18 17 16 38 38 H 1.09007 * 110.02885 * 238.56742 * 19 15 9 39 39 H 1.08999 * 110.03490 * 359.94333 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 0.0130 9 6 1.2512 -2.4991 -0.0199 10 6 0.3583 -2.5910 1.2192 11 6 1.2062 -2.4143 2.4958 12 6 0.5685 -3.3922 3.5137 13 6 0.2011 -4.6116 2.6321 14 6 -0.2808 -3.9881 1.3059 15 6 0.3848 -2.5692 -1.2790 16 6 -0.0297 -4.0293 -1.5547 17 6 0.0071 -4.1497 -3.0984 18 6 1.2432 -3.2972 -3.4784 19 6 1.1942 -2.1037 -2.5022 20 1 -0.4850 -0.8360 -0.0834 21 1 1.9595 -3.3275 -0.0196 22 1 -0.4181 -1.8272 1.1770 23 1 2.2444 -2.6858 2.3048 24 1 1.1398 -1.3888 2.8588 25 1 -0.3246 -2.9560 3.9612 26 1 1.2862 -3.6747 4.2839 27 1 -0.5990 -5.1895 3.0947 28 1 1.0755 -5.2399 2.4627 29 1 -1.3674 -3.9022 1.3067 30 1 0.0444 -4.6003 0.4647 31 1 -0.5007 -1.9454 -1.1579 32 1 0.6813 -4.7199 -1.1012 33 1 -1.0364 -4.2170 -1.1813 34 1 -0.8990 -3.7347 -3.5400 35 1 0.1441 -5.1868 -3.4048 36 1 1.1653 -2.9506 -4.5090 37 1 2.1609 -3.8681 -3.3372 38 1 0.7008 -1.2545 -2.9752 39 1 2.2038 -1.8270 -2.1987 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = -41.114400 kcal Electronic energy + Delta-G solvation = -16583.089654 eV Core-core repulsion = 14295.619555 eV Total energy + Delta-G solvation = -2287.470098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48328 -37.93756 -35.31763 -31.72594 -29.99281 -29.13869 -28.26033 -27.05349 -23.99595 -21.63400 -21.24425 -20.14483 -20.00569 -19.02637 -16.74169 -16.37618 -15.90263 -15.69226 -15.35525 -14.35916 -14.21059 -14.00795 -13.80907 -13.75803 -12.82801 -12.70416 -12.21961 -12.09668 -11.96729 -11.91768 -11.84118 -11.76338 -11.70032 -11.47808 -11.44546 -11.28454 -11.10475 -10.86251 -10.67085 -10.18574 -10.09115 -8.22100 -6.03883 1.52178 1.58271 1.74604 2.63380 3.38013 3.90028 3.92696 3.97885 4.01780 4.05812 4.14931 4.54748 4.67356 4.71140 4.80238 4.84994 4.87732 4.89115 4.92110 4.96008 5.05229 5.07755 5.10624 5.15768 5.21335 5.24377 5.28474 5.32819 5.48416 5.53406 5.57032 5.66093 5.68504 5.76350 5.92134 6.00800 6.28592 6.53237 6.96334 7.69484 9.04723 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.015752 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.221925 B = 1777.147195 C = 3071.254835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.007 4.007 3 Si 1.087 2.913 4 H -0.282 1.282 5 H -0.278 1.278 6 H -0.289 1.289 7 C -0.584 4.584 8 H 0.025 0.975 9 C 0.047 3.953 10 C -0.089 4.089 11 C -0.092 4.092 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.133 4.133 15 C -0.083 4.083 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.103 4.103 20 H 0.278 0.722 21 H 0.016 0.984 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -9.092 -0.453 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.207 4.207 3 Si 0.913 3.087 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.622 4.622 8 H 0.043 0.957 9 C 0.028 3.972 10 C -0.108 4.108 11 C -0.130 4.130 12 C -0.160 4.160 13 C -0.152 4.152 14 C -0.170 4.170 15 C -0.103 4.103 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.141 4.141 20 H 0.094 0.906 21 H 0.034 0.966 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.236 -7.452 -0.385 7.466 hybrid contribution 0.222 -0.874 -0.025 0.902 sum -0.015 -8.326 -0.410 8.336 Atomic orbital electron populations 1.70859 1.07545 1.32272 1.48053 1.26336 0.96564 1.04221 0.93622 0.83320 0.74562 0.73719 0.77087 1.20874 1.20393 1.21543 1.22018 0.92861 0.93450 1.53864 0.95686 1.19034 0.92792 0.94578 0.90806 1.21848 0.97466 0.95474 0.96058 1.22025 0.98549 0.97190 0.95247 1.22527 1.00047 0.96107 0.97326 1.22305 1.00905 0.96862 0.95080 1.22599 0.99007 0.96626 0.98802 1.21808 0.97572 0.94752 0.96123 1.22633 1.00319 0.96208 0.96065 1.22502 0.97662 1.00030 0.95392 1.22374 0.98512 0.96424 0.98422 1.21989 1.00332 0.96505 0.95232 0.90607 0.96598 0.93995 0.93439 0.95531 0.92288 0.90801 0.90545 0.91551 0.93360 0.90292 0.94461 0.91597 0.92147 0.92019 0.89985 0.91492 0.91769 0.95781 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.41 12.71 21.45 0.27 -55.13 16 2 C -0.01 -0.40 5.05 84.66 0.43 0.02 16 3 Si 1.09 51.18 29.90 68.60 2.05 53.23 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.58 -31.65 5.79 25.60 0.15 -31.51 16 8 H 0.02 1.40 7.81 -2.91 -0.02 1.38 16 9 C 0.05 2.23 1.25 -11.54 -0.01 2.22 16 10 C -0.09 -4.00 2.14 -10.07 -0.02 -4.02 16 11 C -0.09 -3.95 5.57 31.67 0.18 -3.78 16 12 C -0.12 -4.05 6.91 31.89 0.22 -3.83 16 13 C -0.11 -3.45 6.83 31.67 0.22 -3.23 16 14 C -0.13 -4.77 5.40 31.32 0.17 -4.60 16 15 C -0.08 -3.69 2.01 -10.07 -0.02 -3.71 16 16 C -0.12 -4.01 4.38 31.67 0.14 -3.87 16 17 C -0.12 -3.56 6.91 31.88 0.22 -3.34 16 18 C -0.12 -3.97 6.83 31.67 0.22 -3.76 16 19 C -0.10 -4.46 5.85 31.32 0.18 -4.28 16 20 H 0.28 16.01 3.03 -92.70 -0.28 15.73 16 21 H 0.02 0.75 7.72 -2.39 -0.02 0.73 16 22 H 0.04 2.18 5.44 -2.39 -0.01 2.17 16 23 H 0.05 2.08 7.75 -2.39 -0.02 2.06 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 2.70 4.18 -2.39 -0.01 2.69 16 31 H 0.04 1.89 5.62 -2.39 -0.01 1.88 16 32 H 0.07 2.22 6.31 -2.39 -0.02 2.21 16 33 H 0.06 2.00 7.50 -2.39 -0.02 1.99 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.05 2.59 6.39 -2.39 -0.02 2.57 16 Total: -1.00 -59.41 280.16 5.87 -53.54 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.48 Total: 16.05 kcal Atomic # 6 Polarization: -69.74 SS G_CDS: 2.06 Total: -67.68 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.27 Total: -55.13 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -59.41 5.87 -53.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.428 kcal (2) G-P(sol) polarization free energy of solvation -59.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds