Wall clock time and date at job start Mon Mar 30 2020 03:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46784 * 110.99889 * 2 1 4 4 C 1.50819 * 105.44611 * 238.11804 * 3 2 1 5 5 O 1.21493 * 126.81384 * 179.97438 * 4 3 2 6 6 C 1.42722 * 106.37076 * 0.26192 * 4 3 2 7 7 C 1.41691 * 136.85747 * 180.56569 * 6 4 3 8 8 C 1.38836 * 125.09965 * 359.21557 * 7 6 4 9 9 H 1.08001 * 119.99641 * 0.30081 * 8 7 6 10 10 C 1.40643 * 119.99901 * 180.29732 * 8 7 6 11 11 N 1.30500 * 120.00256 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00076 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47110 * 89.99642 * 12 10 8 14 14 H 1.48500 * 109.47058 * 209.99937 * 12 10 8 15 15 H 1.48504 * 109.46936 * 329.99723 * 12 10 8 16 16 S 1.75309 * 109.79994 * 179.45266 * 7 6 4 17 17 C 1.75130 * 91.69338 * 359.72957 * 16 7 6 18 18 C 1.37612 * 111.16343 * 0.02562 * 17 16 7 19 19 H 1.09007 * 109.46717 * 60.12544 * 1 2 3 20 20 H 1.08991 * 109.47113 * 180.12489 * 1 2 3 21 21 H 1.09004 * 109.46976 * 300.12950 * 1 2 3 22 22 H 1.08998 * 110.25142 * 119.12883 * 3 2 1 23 23 H 1.08994 * 110.32902 * 357.15241 * 3 2 1 24 24 H 0.96994 * 120.00439 * 180.02562 * 11 10 8 25 25 H 1.07999 * 124.42078 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3704 0.0000 4 6 2.8557 1.4702 -1.2344 5 8 3.4791 2.4428 -1.6105 6 6 2.7872 0.1975 -1.8766 7 6 3.3351 -0.4067 -3.0352 8 6 4.1800 0.2220 -3.9399 9 1 4.4704 1.2503 -3.7826 10 6 4.6577 -0.4801 -5.0610 11 7 4.3072 -1.7228 -5.2506 12 14 5.7950 0.3656 -6.2778 13 1 7.2056 0.1628 -5.8602 14 1 5.5911 -0.2128 -7.6303 15 1 5.4925 1.8191 -6.3103 16 16 2.7808 -2.0653 -3.1587 17 6 1.8522 -1.9196 -1.6810 18 6 1.9742 -0.6603 -1.1397 19 1 -0.3633 0.5119 -0.8912 20 1 -0.3633 -1.0276 0.0022 21 1 -0.3633 0.5159 0.8889 22 1 2.5949 1.5442 0.8933 23 1 1.1777 2.0897 -0.0508 24 1 4.6369 -2.2072 -6.0236 25 1 1.2609 -2.7143 -1.2506 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279771.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:06 Heat of formation + Delta-G solvation = -15.174081 kcal Electronic energy + Delta-G solvation = -12889.862318 eV Core-core repulsion = 10573.344753 eV Total energy + Delta-G solvation = -2316.517565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.53398 -36.23824 -34.96397 -32.90595 -29.12190 -28.77384 -25.06175 -24.08612 -22.49774 -19.03741 -18.14290 -17.41286 -15.62333 -15.33980 -15.00329 -14.53052 -13.65418 -13.22596 -13.11194 -12.67458 -12.44430 -12.07887 -11.98960 -11.69070 -11.27073 -11.17463 -10.92063 -10.56723 -10.28148 -9.84342 -9.54271 -8.77055 -8.07618 -7.48092 -7.41312 -6.66279 -4.92144 2.23218 2.78027 2.85415 2.90597 2.98787 3.41815 3.48923 3.72451 4.07860 4.66651 4.94366 5.39529 5.65957 5.73022 5.90213 6.10557 6.17110 6.42428 6.56807 6.81069 7.10332 7.10928 7.26147 7.62313 7.81374 7.96799 8.16612 8.28369 9.05774 9.36183 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.037026 B = 0.010971 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.048565 B = 2551.592736 C = 3233.366005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.473 5.473 3 C 0.002 3.998 4 C 0.398 3.602 5 O -0.519 6.519 6 C -0.441 4.441 7 C 0.078 3.922 8 C -0.327 4.327 9 H 0.113 0.887 10 C 0.046 3.954 11 N -0.744 5.744 12 Si 0.943 3.057 13 H -0.259 1.259 14 H -0.268 1.268 15 H -0.251 1.251 16 S 0.159 5.841 17 C -0.405 4.405 18 C 0.142 3.858 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.099 0.901 23 H 0.080 0.920 24 H 0.308 0.692 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -0.563 0.097 2.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.192 5.192 3 C -0.126 4.126 4 C 0.287 3.713 5 O -0.406 6.406 6 C -0.449 4.449 7 C -0.045 4.045 8 C -0.362 4.362 9 H 0.131 0.869 10 C -0.180 4.180 11 N -0.369 5.369 12 Si 0.765 3.235 13 H -0.183 1.183 14 H -0.192 1.192 15 H -0.174 1.174 16 S 0.418 5.582 17 C -0.541 4.541 18 C 0.037 3.963 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.117 0.883 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.591 -1.727 -0.612 2.427 hybrid contribution -0.239 1.543 0.150 1.568 sum -1.830 -0.185 -0.462 1.896 Atomic orbital electron populations 1.22428 0.86877 1.02255 1.00155 1.60319 1.07769 1.13032 1.38033 1.22876 0.99807 0.89295 1.00664 1.20429 0.79599 0.86638 0.84642 1.90434 1.42849 1.37914 1.69377 1.19215 1.21992 0.99025 1.04640 1.21743 0.93897 0.95406 0.93412 1.19737 1.15631 1.00236 1.00547 0.86939 1.26659 0.97033 0.94780 0.99573 1.68674 1.32502 1.09212 1.26476 0.85655 0.79433 0.80888 0.77532 1.18293 1.19219 1.17399 1.84260 1.45210 1.10212 1.18567 1.25079 1.20928 0.98628 1.09417 1.19018 0.96018 0.93147 0.88103 0.95110 0.91233 0.91741 0.88261 0.90239 0.87884 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.22 60.06 0.55 1.07 15 2 N -0.47 -10.03 5.34 -180.18 -0.96 -10.99 15 3 C 0.00 0.05 6.99 -4.98 -0.03 0.01 15 4 C 0.40 10.12 7.71 -32.52 -0.25 9.87 15 5 O -0.52 -14.25 17.83 5.37 0.10 -14.16 15 6 C -0.44 -11.73 6.27 -106.46 -0.67 -12.40 15 7 C 0.08 2.08 6.22 -38.04 -0.24 1.85 15 8 C -0.33 -8.36 9.27 -38.45 -0.36 -8.71 15 9 H 0.11 2.94 7.64 -52.49 -0.40 2.54 15 10 C 0.05 1.03 5.51 -17.21 -0.09 0.94 15 11 N -0.74 -16.53 10.59 55.59 0.59 -15.95 15 12 Si 0.94 16.72 29.57 -169.99 -5.03 11.69 15 13 H -0.26 -4.51 7.11 56.52 0.40 -4.11 15 14 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 15 H -0.25 -4.55 7.11 56.52 0.40 -4.14 15 16 S 0.16 3.84 20.11 -107.50 -2.16 1.68 15 17 C -0.40 -9.65 11.26 30.50 0.34 -9.31 15 18 C 0.14 3.48 6.06 -83.44 -0.51 2.98 15 19 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.10 1.85 8.14 -51.93 -0.42 1.43 15 23 H 0.08 1.43 7.59 -51.93 -0.39 1.03 15 24 H 0.31 5.95 8.29 -40.82 -0.34 5.61 15 25 H 0.12 2.70 8.06 -52.49 -0.42 2.28 15 LS Contribution 237.41 15.07 3.58 3.58 Total: -1.00 -28.80 237.41 -7.18 -35.98 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -2.04 Total: 1.88 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.25 Total: -13.71 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: -0.37 Total: -26.94 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.10 Total: -14.16 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.16 Total: 1.68 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.80 -7.18 -35.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279771.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.808 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds