Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46784 * 110.99889 * 2 1 4 4 C 1.50819 * 105.44611 * 238.11804 * 3 2 1 5 5 O 1.21493 * 126.81384 * 179.97438 * 4 3 2 6 6 C 1.42722 * 106.37076 * 0.26192 * 4 3 2 7 7 C 1.41691 * 136.85747 * 180.56569 * 6 4 3 8 8 C 1.38836 * 125.09965 * 359.21557 * 7 6 4 9 9 H 1.08001 * 119.99641 * 0.30081 * 8 7 6 10 10 C 1.40643 * 119.99901 * 180.29732 * 8 7 6 11 11 N 1.30500 * 120.00256 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00076 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47110 * 89.99642 * 12 10 8 14 14 H 1.48500 * 109.47058 * 209.99937 * 12 10 8 15 15 H 1.48504 * 109.46936 * 329.99723 * 12 10 8 16 16 S 1.75309 * 109.79994 * 179.45266 * 7 6 4 17 17 C 1.75130 * 91.69338 * 359.72957 * 16 7 6 18 18 C 1.37612 * 111.16343 * 0.02562 * 17 16 7 19 19 H 1.09007 * 109.46717 * 60.12544 * 1 2 3 20 20 H 1.08991 * 109.47113 * 180.12489 * 1 2 3 21 21 H 1.09004 * 109.46976 * 300.12950 * 1 2 3 22 22 H 1.08998 * 110.25142 * 119.12883 * 3 2 1 23 23 H 1.08994 * 110.32902 * 357.15241 * 3 2 1 24 24 H 0.96994 * 120.00439 * 180.02562 * 11 10 8 25 25 H 1.07999 * 124.42078 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3704 0.0000 4 6 2.8557 1.4702 -1.2344 5 8 3.4791 2.4428 -1.6105 6 6 2.7872 0.1975 -1.8766 7 6 3.3351 -0.4067 -3.0352 8 6 4.1800 0.2220 -3.9399 9 1 4.4704 1.2503 -3.7826 10 6 4.6577 -0.4801 -5.0610 11 7 4.3072 -1.7228 -5.2506 12 14 5.7950 0.3656 -6.2778 13 1 7.2056 0.1628 -5.8602 14 1 5.5911 -0.2128 -7.6303 15 1 5.4925 1.8191 -6.3103 16 16 2.7808 -2.0653 -3.1587 17 6 1.8522 -1.9196 -1.6810 18 6 1.9742 -0.6603 -1.1397 19 1 -0.3633 0.5119 -0.8912 20 1 -0.3633 -1.0276 0.0022 21 1 -0.3633 0.5159 0.8889 22 1 2.5949 1.5442 0.8933 23 1 1.1777 2.0897 -0.0508 24 1 4.6369 -2.2072 -6.0236 25 1 1.2609 -2.7143 -1.2506 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279771.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = -34.079209 kcal Electronic energy + Delta-G solvation = -12890.682106 eV Core-core repulsion = 10573.344753 eV Total energy + Delta-G solvation = -2317.337353 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.31927 -38.15456 -36.77818 -34.66697 -30.95722 -30.47781 -26.80224 -25.73720 -24.30134 -20.88727 -19.92432 -19.31822 -17.35902 -17.15583 -16.66558 -16.24525 -15.30717 -14.98343 -14.77020 -14.41012 -14.24328 -13.82368 -13.70231 -13.23031 -13.03395 -12.65744 -12.59834 -12.14395 -11.99518 -11.49574 -11.45245 -10.53263 -9.95818 -9.35519 -9.15288 -8.53050 -6.84124 0.40330 1.07889 1.29583 1.46630 1.49588 1.50647 1.84090 2.07918 2.27792 2.88383 3.15392 3.64230 4.19035 4.28361 4.46635 4.61713 4.65468 4.74634 4.89012 5.08621 5.20365 5.33992 5.46699 5.77615 5.89611 6.16669 6.29131 6.46570 7.13043 7.67640 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.037026 B = 0.010971 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.048565 B = 2551.592736 C = 3233.366005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.476 5.476 3 C 0.013 3.987 4 C 0.378 3.622 5 O -0.557 6.557 6 C -0.485 4.485 7 C 0.038 3.962 8 C -0.347 4.347 9 H 0.094 0.906 10 C 0.016 3.984 11 N -0.752 5.752 12 Si 1.013 2.987 13 H -0.251 1.251 14 H -0.242 1.242 15 H -0.262 1.262 16 S 0.165 5.835 17 C -0.415 4.415 18 C 0.138 3.862 19 H 0.024 0.976 20 H 0.076 0.924 21 H 0.102 0.898 22 H 0.121 0.879 23 H 0.110 0.890 24 H 0.326 0.674 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 -0.908 -0.116 2.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.195 5.195 3 C -0.115 4.115 4 C 0.270 3.730 5 O -0.447 6.447 6 C -0.493 4.493 7 C -0.084 4.084 8 C -0.382 4.382 9 H 0.112 0.888 10 C -0.210 4.210 11 N -0.377 5.377 12 Si 0.829 3.171 13 H -0.175 1.175 14 H -0.165 1.165 15 H -0.186 1.186 16 S 0.423 5.577 17 C -0.551 4.551 18 C 0.033 3.967 19 H 0.043 0.957 20 H 0.095 0.905 21 H 0.121 0.879 22 H 0.139 0.861 23 H 0.128 0.872 24 H 0.140 0.860 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.889 -2.113 -0.796 2.944 hybrid contribution -0.162 1.589 0.190 1.609 sum -2.051 -0.524 -0.606 2.202 Atomic orbital electron populations 1.22586 0.84155 1.03370 1.01704 1.60384 1.10113 1.12901 1.36056 1.22891 1.00056 0.89804 0.98728 1.21096 0.79789 0.85871 0.86227 1.90390 1.44694 1.38743 1.70830 1.19771 1.23420 1.00480 1.05640 1.22218 0.94906 0.97021 0.94263 1.19921 1.16243 0.99918 1.02084 0.88798 1.27510 0.97999 0.95320 1.00138 1.68618 1.31985 1.09804 1.27299 0.84698 0.77306 0.79028 0.76023 1.17455 1.16457 1.18566 1.83935 1.45570 1.08878 1.19311 1.25293 1.21234 0.99115 1.09420 1.19201 0.95636 0.93088 0.88758 0.95718 0.90504 0.87907 0.86095 0.87208 0.85963 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.22 127.69 1.18 2.06 15 2 N -0.48 -19.33 5.34 -723.98 -3.86 -23.19 15 3 C 0.01 0.53 6.99 85.62 0.60 1.13 15 4 C 0.38 19.54 7.71 26.84 0.21 19.75 15 5 O -0.56 -31.54 17.83 -3.69 -0.07 -31.61 15 6 C -0.49 -26.39 6.27 -21.05 -0.13 -26.52 15 7 C 0.04 2.09 6.22 23.27 0.14 2.24 15 8 C -0.35 -18.27 9.27 23.00 0.21 -18.06 15 9 H 0.09 5.17 7.64 -2.91 -0.02 5.14 15 10 C 0.02 0.69 5.51 85.48 0.47 1.16 15 11 N -0.75 -32.81 10.59 21.95 0.23 -32.58 15 12 Si 1.01 33.23 29.57 68.60 2.03 35.26 15 13 H -0.25 -7.90 7.11 99.48 0.71 -7.20 15 14 H -0.24 -6.92 7.11 99.48 0.71 -6.21 15 15 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 16 S 0.17 8.03 20.11 -56.49 -1.14 6.90 15 17 C -0.41 -19.62 11.26 67.67 0.76 -18.85 15 18 C 0.14 6.74 6.06 37.76 0.23 6.97 15 19 H 0.02 0.80 8.14 -2.38 -0.02 0.78 15 20 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.12 4.25 8.14 -2.39 -0.02 4.23 15 23 H 0.11 3.65 7.59 -2.39 -0.02 3.63 15 24 H 0.33 11.99 8.29 -92.71 -0.77 11.22 15 25 H 0.14 6.05 8.06 -2.91 -0.02 6.03 15 Total: -1.00 -63.42 237.41 2.08 -61.34 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.21 Total: 14.03 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.67 Total: -30.14 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -3.63 Total: -55.77 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.07 Total: -31.61 kcal Atomic # 14 Polarization: 33.23 SS G_CDS: 2.03 Total: 35.26 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -1.14 Total: 6.90 kcal Total: -63.42 2.08 -61.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279771.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.263 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds