Wall clock time and date at job start Mon Mar 30 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 C 1.50704 * 109.47467 * 120.00521 * 2 1 3 5 5 N 1.30499 * 125.64805 * 299.97272 * 4 2 1 6 6 C 1.34122 * 109.25504 * 180.02562 * 5 4 2 7 7 C 1.50703 * 125.98998 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46560 * 25.02627 * 7 6 5 9 9 C 1.52998 * 109.47077 * 145.02628 * 7 6 5 10 10 C 1.50701 * 109.47151 * 265.02982 * 7 6 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27762 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.34671 * 108.02187 * 0.26327 * 6 5 4 19 19 N 1.35039 * 125.65019 * 119.99762 * 4 2 1 20 20 C 1.46501 * 126.39908 * 359.94742 * 19 4 2 21 21 H 1.08995 * 109.47315 * 59.99975 * 1 2 3 22 22 H 1.08999 * 109.46736 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47070 * 299.99400 * 1 2 3 24 24 H 1.09000 * 109.47070 * 240.00600 * 2 1 3 25 25 H 1.08997 * 109.47386 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47256 * 300.00574 * 3 2 1 27 27 H 1.09000 * 109.46619 * 60.00324 * 3 2 1 28 28 H 1.09005 * 109.46870 * 300.00040 * 9 7 6 29 29 H 1.08998 * 109.47156 * 59.99979 * 9 7 6 30 30 H 1.09004 * 109.46783 * 180.02562 * 9 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 32 32 H 1.07999 * 126.59282 * 179.69581 * 18 6 5 33 33 H 1.08998 * 109.47417 * 89.99629 * 20 19 4 34 34 H 1.08999 * 109.47242 * 209.99951 * 20 19 4 35 35 H 1.09001 * 109.47132 * 329.99273 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7865 -0.3619 2.4637 6 6 2.3942 -1.2207 3.2956 7 6 2.3587 -1.1702 4.8014 8 1 1.4577 -0.6497 5.1262 9 6 2.3539 -2.5948 5.3594 10 6 3.5733 -0.4362 5.3083 11 1 4.2987 -0.0457 4.6099 12 6 3.7616 -0.2687 6.6637 13 7 2.8785 -0.7446 7.5142 14 14 5.2712 0.6343 7.2924 15 1 6.1038 1.0674 6.1416 16 1 4.8469 1.8245 8.0726 17 1 6.0632 -0.2714 8.1627 18 6 3.0461 -2.1328 2.5496 19 7 2.8120 -1.8131 1.2394 20 6 3.3176 -2.5299 0.0660 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.4752 -3.1257 4.9927 29 1 3.2547 -3.1153 5.0345 30 1 2.3277 -2.5583 6.4485 31 1 3.0112 -0.6270 8.4678 32 1 3.6381 -2.9590 2.9148 33 1 4.2820 -2.1144 -0.2261 34 1 3.4354 -3.5861 0.3083 35 1 2.6114 -2.4227 -0.7574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:18 Heat of formation + Delta-G solvation = 41.483440 kcal Electronic energy + Delta-G solvation = -15347.911148 eV Core-core repulsion = 12960.482417 eV Total energy + Delta-G solvation = -2387.428731 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.38986 -35.33147 -34.34102 -32.97783 -30.53892 -27.53210 -26.97680 -26.20706 -24.99732 -22.42196 -21.62546 -18.93091 -18.63585 -16.36657 -15.95975 -15.14843 -14.60207 -14.39879 -14.04074 -13.15131 -13.12579 -12.81428 -12.65179 -12.34324 -12.10631 -11.87610 -11.37208 -11.22051 -11.01403 -10.85243 -10.78078 -10.62502 -10.21120 -9.98218 -9.67542 -9.11575 -8.91034 -8.58362 -8.22705 -7.28089 -5.87415 -3.91995 2.77098 3.35872 3.36701 3.44016 3.49282 4.08823 4.56543 4.74965 4.91405 4.98907 5.22201 5.35790 5.41148 5.42886 5.53086 5.67346 5.77608 5.94976 6.02628 6.04976 6.37382 6.43504 6.50458 6.68623 6.97301 7.01859 7.13110 7.36061 7.71340 7.81673 7.96088 8.12197 8.23962 8.56613 9.06937 9.09766 9.70794 11.18501 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032863 B = 0.007532 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.825150 B = 3716.370811 C = 3908.812971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.001 4.001 3 C -0.138 4.138 4 C 0.186 3.814 5 N -0.481 5.481 6 C 0.062 3.938 7 C 0.113 3.887 8 H 0.039 0.961 9 C -0.130 4.130 10 C -0.493 4.493 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.081 4.081 19 N -0.470 5.470 20 C 0.078 3.922 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.008 0.992 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.258 0.742 32 H 0.165 0.835 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -2.430 -15.478 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 C -0.196 4.196 4 C -0.076 4.076 5 N -0.201 5.201 6 C -0.067 4.067 7 C 0.094 3.906 8 H 0.057 0.943 9 C -0.188 4.188 10 C -0.532 4.532 11 H 0.071 0.929 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.210 4.210 19 N -0.157 5.157 20 C -0.066 4.066 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.183 0.817 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.400 -1.866 -15.153 15.332 hybrid contribution 1.544 -0.381 0.119 1.595 sum 0.144 -2.247 -15.035 15.202 Atomic orbital electron populations 1.21762 0.93619 1.01818 1.02399 1.19394 0.96249 0.95526 0.90969 1.21760 1.00882 0.94612 1.02379 1.23052 0.98983 0.89806 0.95714 1.70112 1.24241 1.27349 0.98350 1.21603 0.96031 0.91242 0.97808 1.17197 0.98027 0.94023 0.81397 0.94280 1.21772 0.96321 0.96450 1.04283 1.21088 1.06376 1.34426 0.91296 0.92909 1.24927 0.96478 0.95849 0.96864 1.69896 1.35033 1.46340 1.02008 0.86539 0.83180 0.79572 0.78727 1.19968 1.21052 1.21142 1.22371 1.10547 1.06408 0.81665 1.45104 1.40279 1.23704 1.06568 1.21838 0.99850 0.97471 0.87403 0.92497 0.93064 0.91130 0.91027 0.92974 0.92515 0.91076 0.97335 0.95603 0.89549 0.93160 0.81722 0.91441 0.90234 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 37.16 0.34 -1.41 16 2 C 0.00 -0.01 3.25 -91.77 -0.30 -0.31 16 3 C -0.14 -1.84 9.18 37.16 0.34 -1.50 16 4 C 0.19 3.47 6.41 -155.42 -1.00 2.47 16 5 N -0.48 -11.21 11.25 -7.07 -0.08 -11.29 16 6 C 0.06 1.51 5.96 -82.85 -0.49 1.01 16 7 C 0.11 3.08 2.76 -92.92 -0.26 2.83 16 8 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 9 C -0.13 -3.27 8.55 37.16 0.32 -2.95 16 10 C -0.49 -14.37 8.55 -34.44 -0.29 -14.66 16 11 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -26.32 11.31 55.43 0.63 -25.70 16 14 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 C -0.08 -1.69 10.73 -16.56 -0.18 -1.86 16 19 N -0.47 -8.20 3.15 -121.28 -0.38 -8.59 16 20 C 0.08 0.88 10.83 59.85 0.65 1.53 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.80 6.73 -51.93 -0.35 0.45 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.02 0.60 7.28 -51.93 -0.38 0.22 16 30 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 32 H 0.17 3.14 7.38 -52.49 -0.39 2.75 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.70 7.05 -51.93 -0.37 0.34 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -32.81 289.21 -7.02 -39.84 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.56 Total: -2.49 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.96 Total: -13.26 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.17 Total: -45.57 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.81 -7.02 -39.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.322 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds