Wall clock time and date at job start Mon Mar 30 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 C 1.50704 * 109.47467 * 120.00521 * 2 1 3 5 5 N 1.30499 * 125.64805 * 299.97272 * 4 2 1 6 6 C 1.34122 * 109.25504 * 180.02562 * 5 4 2 7 7 C 1.50703 * 125.98998 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46560 * 25.02627 * 7 6 5 9 9 C 1.52998 * 109.47077 * 145.02628 * 7 6 5 10 10 C 1.50701 * 109.47151 * 265.02982 * 7 6 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27762 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.34671 * 108.02187 * 0.26327 * 6 5 4 19 19 N 1.35039 * 125.65019 * 119.99762 * 4 2 1 20 20 C 1.46501 * 126.39908 * 359.94742 * 19 4 2 21 21 H 1.08995 * 109.47315 * 59.99975 * 1 2 3 22 22 H 1.08999 * 109.46736 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47070 * 299.99400 * 1 2 3 24 24 H 1.09000 * 109.47070 * 240.00600 * 2 1 3 25 25 H 1.08997 * 109.47386 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47256 * 300.00574 * 3 2 1 27 27 H 1.09000 * 109.46619 * 60.00324 * 3 2 1 28 28 H 1.09005 * 109.46870 * 300.00040 * 9 7 6 29 29 H 1.08998 * 109.47156 * 59.99979 * 9 7 6 30 30 H 1.09004 * 109.46783 * 180.02562 * 9 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 32 32 H 1.07999 * 126.59282 * 179.69581 * 18 6 5 33 33 H 1.08998 * 109.47417 * 89.99629 * 20 19 4 34 34 H 1.08999 * 109.47242 * 209.99951 * 20 19 4 35 35 H 1.09001 * 109.47132 * 329.99273 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7865 -0.3619 2.4637 6 6 2.3942 -1.2207 3.2956 7 6 2.3587 -1.1702 4.8014 8 1 1.4577 -0.6497 5.1262 9 6 2.3539 -2.5948 5.3594 10 6 3.5733 -0.4362 5.3083 11 1 4.2987 -0.0457 4.6099 12 6 3.7616 -0.2687 6.6637 13 7 2.8785 -0.7446 7.5142 14 14 5.2712 0.6343 7.2924 15 1 6.1038 1.0674 6.1416 16 1 4.8469 1.8245 8.0726 17 1 6.0632 -0.2714 8.1627 18 6 3.0461 -2.1328 2.5496 19 7 2.8120 -1.8131 1.2394 20 6 3.3176 -2.5299 0.0660 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.4752 -3.1257 4.9927 29 1 3.2547 -3.1153 5.0345 30 1 2.3277 -2.5583 6.4485 31 1 3.0112 -0.6270 8.4678 32 1 3.6381 -2.9590 2.9148 33 1 4.2820 -2.1144 -0.2261 34 1 3.4354 -3.5861 0.3083 35 1 2.6114 -2.4227 -0.7574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:18 Heat of formation + Delta-G solvation = 21.296150 kcal Electronic energy + Delta-G solvation = -15348.786534 eV Core-core repulsion = 12960.482417 eV Total energy + Delta-G solvation = -2388.304117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.89415 -36.85176 -35.86394 -34.60534 -32.56171 -29.01098 -28.00013 -27.52755 -27.16808 -24.05478 -23.11838 -20.68597 -19.94616 -18.31039 -17.64653 -16.52260 -16.43472 -15.73748 -15.30523 -14.75214 -14.60436 -14.26658 -14.08520 -13.51854 -13.49976 -13.33420 -12.94460 -12.85263 -12.65225 -12.39685 -12.23801 -12.10596 -12.04857 -11.79023 -11.63788 -11.10090 -10.65125 -10.39227 -10.18962 -8.92741 -8.06879 -6.21557 1.28952 1.39248 1.40330 1.52738 2.09200 2.34346 2.53978 3.17751 3.53226 3.90087 4.06076 4.20984 4.24919 4.40016 4.49276 4.66102 4.73555 4.84031 4.85579 4.89923 4.98954 5.04065 5.08438 5.11722 5.28443 5.39328 5.41714 5.53832 5.58916 5.90006 5.99139 6.18606 6.38548 6.58503 6.84873 7.44683 7.49371 8.97376 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032863 B = 0.007532 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.825150 B = 3716.370811 C = 3908.812971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.002 4.002 3 C -0.135 4.135 4 C 0.194 3.806 5 N -0.535 5.535 6 C 0.014 3.986 7 C 0.115 3.885 8 H -0.012 1.012 9 C -0.114 4.114 10 C -0.513 4.513 11 H 0.038 0.962 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 0.959 3.041 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.271 1.271 18 C -0.073 4.073 19 N -0.465 5.465 20 C 0.066 3.934 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.114 0.886 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.022 0.978 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.263 0.737 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -2.958 -18.223 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 C -0.193 4.193 4 C -0.068 4.068 5 N -0.255 5.255 6 C -0.114 4.114 7 C 0.095 3.905 8 H 0.007 0.993 9 C -0.172 4.172 10 C -0.552 4.552 11 H 0.056 0.944 12 C -0.186 4.186 13 N -0.558 5.558 14 Si 0.784 3.216 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.196 1.196 18 C -0.204 4.204 19 N -0.149 5.149 20 C -0.074 4.074 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.131 0.869 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.197 0.803 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.293 -2.418 -17.926 18.091 hybrid contribution 1.154 -0.209 0.876 1.464 sum 0.861 -2.627 -17.050 17.272 Atomic orbital electron populations 1.21733 0.92834 1.01950 1.02642 1.19721 0.96854 0.95532 0.90068 1.21738 1.00464 0.94470 1.02620 1.23938 0.97469 0.89612 0.95824 1.69984 1.26211 1.28801 1.00472 1.21247 0.99452 0.93982 0.96767 1.16967 0.95010 0.94178 0.84305 0.99341 1.21553 0.97569 0.95728 1.02393 1.21258 1.06933 1.35364 0.91635 0.94384 1.25728 0.99471 0.96475 0.96889 1.70022 1.36551 1.46884 1.02359 0.85501 0.79511 0.78495 0.78094 1.19861 1.20544 1.19646 1.22400 1.09381 1.05546 0.83068 1.45387 1.39166 1.23341 1.06991 1.22324 1.01356 0.98007 0.85748 0.88842 0.93007 0.94275 0.86853 0.93570 0.88708 0.94375 0.95925 0.94201 0.92042 0.92803 0.80278 0.89719 0.88409 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.18 71.98 0.66 -2.43 16 2 C 0.00 -0.04 3.25 -11.54 -0.04 -0.08 16 3 C -0.13 -3.32 9.18 71.98 0.66 -2.66 16 4 C 0.19 7.05 6.41 138.13 0.89 7.94 16 5 N -0.53 -25.71 11.25 -176.28 -1.98 -27.69 16 6 C 0.01 0.69 5.96 41.39 0.25 0.93 16 7 C 0.11 6.60 2.76 -12.29 -0.03 6.57 16 8 H -0.01 -0.76 8.14 -2.38 -0.02 -0.77 16 9 C -0.11 -5.92 8.55 71.98 0.62 -5.31 16 10 C -0.51 -31.11 8.55 25.60 0.22 -30.89 16 11 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 12 C 0.01 0.73 5.30 84.65 0.45 1.18 16 13 N -0.92 -55.71 11.31 21.45 0.24 -55.47 16 14 Si 0.96 46.14 29.54 68.60 2.03 48.16 16 15 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C -0.07 -2.99 10.73 83.09 0.89 -2.10 16 19 N -0.46 -15.19 3.15 -537.61 -1.69 -16.89 16 20 C 0.07 1.21 10.83 127.77 1.38 2.59 16 21 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.11 1.90 6.73 -2.39 -0.02 1.89 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.04 1.89 7.28 -2.39 -0.02 1.87 16 30 H 0.06 3.47 6.06 -2.38 -0.01 3.45 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.18 6.62 7.38 -2.91 -0.02 6.60 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.35 7.05 -2.39 -0.02 1.33 16 Total: -1.00 -75.89 289.21 5.58 -70.31 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.05 Total: 5.84 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 5.94 Total: -24.26 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -3.44 Total: -100.05 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -75.89 5.58 -70.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.604 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds