Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86793 * 120.00011 * 2 1 4 4 H 1.48494 * 109.47325 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47088 * 120.00630 * 3 2 1 6 6 H 1.48501 * 109.47199 * 240.00345 * 3 2 1 7 7 C 1.40079 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99855 * 2.73049 * 7 2 1 9 9 C 1.40042 * 119.99868 * 182.72931 * 7 2 1 10 10 S 1.76216 * 126.25554 * 350.49880 * 9 7 2 11 11 C 1.70876 * 90.45068 * 179.97438 * 10 9 7 12 12 N 1.29527 * 110.87561 * 0.35059 * 11 10 9 13 13 C 1.30670 * 117.62867 * 359.72386 * 12 11 10 14 14 C 1.50701 * 123.22415 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.46946 * 269.97816 * 14 13 12 16 16 F 1.39905 * 109.47297 * 29.97393 * 14 13 12 17 17 F 1.39897 * 109.47719 * 149.97399 * 14 13 12 18 18 H 0.96999 * 119.99897 * 173.44211 * 1 2 3 19 19 H 1.07995 * 124.56564 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2777 2.7464 0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0963 1.6964 -1.2125 7 6 2.0090 -1.2131 -0.0005 8 1 1.4699 -2.1479 -0.0455 9 6 3.4082 -1.2139 0.0572 10 16 4.4585 0.1924 -0.1001 11 6 5.8368 -0.7979 0.0987 12 7 5.4957 -2.0378 0.2542 13 6 4.2203 -2.3216 0.2414 14 6 3.6838 -3.7196 0.4112 15 9 3.5703 -4.3309 -0.8421 16 9 4.5580 -4.4604 1.2138 17 9 2.4251 -3.6655 1.0194 18 1 -0.4850 -0.8345 -0.0959 19 1 6.8554 -0.4392 0.0902 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285030.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = -141.055917 kcal Electronic energy + Delta-G solvation = -13394.622904 eV Core-core repulsion = 10394.956858 eV Total energy + Delta-G solvation = -2999.666046 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.997 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.08900 -46.63313 -46.58350 -37.94439 -34.57140 -30.59880 -27.38350 -23.63908 -22.99000 -19.54854 -19.09788 -17.58649 -17.49010 -16.58953 -15.86447 -14.55360 -13.97374 -13.77522 -13.53930 -13.36097 -13.07295 -13.02372 -12.80035 -12.73578 -12.46792 -11.60993 -11.50973 -10.93043 -10.25248 -10.04542 -9.73446 -8.50682 -8.28690 -7.91427 -7.76169 -5.13935 2.05707 2.41531 2.67398 2.97573 3.01411 3.57434 3.65443 3.74437 3.84933 4.46098 4.96094 5.30325 5.59974 6.07182 6.53228 6.81409 6.99629 7.41482 7.57824 7.84939 9.07854 9.31340 Molecular weight = 223.00amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.015346 C = 0.011322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.747114 B = 1824.106567 C = 2472.569430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.045 3.955 3 Si 0.938 3.062 4 H -0.229 1.229 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.388 4.388 8 H 0.114 0.886 9 C 0.038 3.962 10 S -0.034 6.034 11 C -0.134 4.134 12 N -0.388 5.388 13 C -0.258 4.258 14 C 0.566 3.434 15 F -0.195 7.195 16 F -0.189 7.189 17 F -0.181 7.181 18 H 0.299 0.701 19 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 1.620 -0.250 2.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.182 4.182 3 Si 0.759 3.241 4 H -0.152 1.152 5 H -0.135 1.135 6 H -0.127 1.127 7 C -0.425 4.425 8 H 0.131 0.869 9 C -0.084 4.084 10 S 0.211 5.789 11 C -0.427 4.427 12 N -0.097 5.097 13 C -0.388 4.388 14 C 0.509 3.491 15 F -0.176 7.176 16 F -0.170 7.170 17 F -0.163 7.163 18 H 0.111 0.889 19 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.967 3.777 -0.224 4.264 hybrid contribution -0.270 -2.840 0.044 2.853 sum 1.697 0.937 -0.180 1.947 Atomic orbital electron populations 1.70539 1.07715 1.34216 1.25424 1.27690 0.95881 1.04244 0.90434 0.84424 0.79270 0.75637 0.84803 1.15213 1.13490 1.12695 1.20883 0.90049 0.98005 1.33550 0.86879 1.22747 0.97127 0.92239 0.96332 1.84083 1.02735 1.14195 1.77897 1.26710 1.01730 0.90623 1.23598 1.64714 1.17153 1.19575 1.08252 1.19189 0.89242 0.92145 1.38261 1.17060 0.74302 0.84819 0.72889 1.93123 1.95992 1.85396 1.43126 1.93089 1.69970 1.79557 1.74390 1.93094 1.42870 1.96655 1.83631 0.88879 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.68 13.66 55.56 0.76 -16.92 13 2 C 0.05 1.05 5.52 -17.27 -0.10 0.96 13 3 Si 0.94 18.25 24.56 -169.99 -4.18 14.08 13 4 H -0.23 -4.18 7.11 56.52 0.40 -3.78 13 5 H -0.21 -4.01 6.52 56.52 0.37 -3.64 13 6 H -0.20 -3.71 6.20 61.51 0.38 -3.33 13 7 C -0.39 -9.58 8.88 -38.22 -0.34 -9.92 13 8 H 0.11 2.86 6.27 -52.49 -0.33 2.53 13 9 C 0.04 0.96 6.02 -38.78 -0.23 0.72 13 10 S -0.03 -0.76 15.57 -107.50 -1.67 -2.43 13 11 C -0.13 -3.02 12.19 51.79 0.63 -2.39 13 12 N -0.39 -9.75 10.30 -10.90 -0.11 -9.87 13 13 C -0.26 -6.60 6.34 -82.96 -0.53 -7.12 13 14 C 0.57 13.56 3.41 36.01 0.12 13.68 13 15 F -0.19 -4.54 17.30 2.25 0.04 -4.50 13 16 F -0.19 -4.38 17.17 2.25 0.04 -4.34 13 17 F -0.18 -4.24 14.60 2.25 0.03 -4.21 13 18 H 0.30 6.70 8.73 -40.82 -0.36 6.35 13 19 H 0.17 3.15 8.06 -52.49 -0.42 2.72 13 LS Contribution 198.40 15.07 2.99 2.99 Total: -1.00 -25.93 198.40 -2.50 -28.42 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 0.04 Total: 0.85 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.44 Total: -4.07 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.65 Total: -26.79 kcal Atomic # 9 Polarization: -13.16 SS G_CDS: 0.11 Total: -13.05 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.18 Total: 14.08 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.67 Total: -2.43 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -25.93 -2.50 -28.42 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285030.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.631 kcal (2) G-P(sol) polarization free energy of solvation -25.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds