Wall clock time and date at job start Mon Mar 30 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46671 * 110.77813 * 2 1 4 4 C 1.50950 * 105.74146 * 122.94420 * 3 2 1 5 5 O 1.21365 * 127.23634 * 179.84982 * 4 3 2 6 6 C 1.47970 * 105.51958 * 359.58598 * 4 3 2 7 7 C 1.38420 * 137.57997 * 180.26960 * 6 4 3 8 8 S 1.69995 * 111.59930 * 179.97438 * 7 6 4 9 9 C 1.75203 * 92.24242 * 0.02562 * 8 7 6 10 10 C 1.39763 * 124.96600 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99868 * 173.91839 * 10 9 8 12 12 C 1.39909 * 120.00117 * 353.91535 * 10 9 8 13 13 N 1.31042 * 119.99708 * 6.75078 * 12 10 9 14 14 Si 1.86800 * 120.00295 * 186.74974 * 12 10 9 15 15 H 1.48496 * 109.46836 * 94.98362 * 14 12 10 16 16 H 1.48497 * 109.47241 * 214.98492 * 14 12 10 17 17 H 1.48500 * 109.46612 * 334.98642 * 14 12 10 18 18 C 1.39739 * 110.99884 * 121.42903 * 2 1 3 19 19 H 1.09001 * 109.47273 * 298.56948 * 1 2 3 20 20 H 1.09002 * 109.46844 * 58.56853 * 1 2 3 21 21 H 1.08999 * 109.46791 * 178.56816 * 1 2 3 22 22 H 1.08995 * 110.31863 * 3.80614 * 3 2 1 23 23 H 1.09003 * 110.06363 * 241.94014 * 3 2 1 24 24 H 1.07995 * 124.19653 * 359.97438 * 7 6 4 25 25 H 0.97000 * 119.99891 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9894 1.3713 0.0000 4 6 2.8734 1.4739 1.2193 5 8 3.5021 2.4432 1.5911 6 6 2.8070 0.1463 1.8693 7 6 3.3369 -0.4707 2.9893 8 16 2.8086 -2.0807 3.1257 9 6 1.8518 -1.9631 1.6627 10 6 1.0831 -2.9981 1.1230 11 1 0.4462 -2.8100 0.2714 12 6 1.1388 -4.2777 1.6859 13 7 1.8063 -4.4766 2.7959 14 14 0.2618 -5.7026 0.8553 15 1 1.2173 -6.4307 -0.0176 16 1 -0.2684 -6.6277 1.8888 17 1 -0.8607 -5.1818 0.0343 18 6 1.9698 -0.6803 1.1132 19 1 -0.3634 0.4915 0.9025 20 1 -0.3633 0.5359 -0.8769 21 1 -0.3633 -1.0274 -0.0257 22 1 1.1701 2.0870 0.0678 23 1 2.5723 1.5501 -0.9035 24 1 4.0031 0.0110 3.6896 25 1 1.8452 -5.3639 3.1861 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287547.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:08 Heat of formation + Delta-G solvation = -6.809005 kcal Electronic energy + Delta-G solvation = -12908.743401 eV Core-core repulsion = 10592.588572 eV Total energy + Delta-G solvation = -2316.154828 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.56187 -36.88425 -34.40077 -33.05398 -29.77880 -27.71842 -25.53402 -23.32269 -23.05931 -19.17570 -18.08102 -17.52450 -15.69574 -15.29739 -15.05781 -14.52361 -13.83206 -13.41113 -13.11670 -12.89891 -12.44703 -12.24363 -11.89941 -11.50839 -11.31827 -11.06408 -10.85256 -10.45639 -10.39843 -9.65488 -9.54528 -8.94567 -8.26631 -7.50419 -7.13105 -6.66936 -4.47527 1.87335 2.63090 2.90185 2.95538 3.15260 3.36334 3.59693 3.78766 4.02933 4.72263 4.94696 5.04670 5.57013 5.75485 5.93541 6.18449 6.30397 6.42529 6.51659 6.79429 6.96968 7.11759 7.41155 7.73134 7.94599 8.02837 8.33482 8.43006 8.50983 9.75204 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.038151 B = 0.010779 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.751838 B = 2596.928622 C = 3251.521688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.442 5.442 3 C 0.006 3.994 4 C 0.405 3.595 5 O -0.478 6.478 6 C -0.192 4.192 7 C -0.373 4.373 8 S 0.276 5.724 9 C 0.006 3.994 10 C -0.372 4.372 11 H 0.097 0.903 12 C 0.048 3.952 13 N -0.794 5.794 14 Si 0.936 3.064 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.259 1.259 18 C -0.116 4.116 19 H 0.021 0.979 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.127 0.873 25 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -0.590 -2.123 3.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.161 5.161 3 C -0.123 4.123 4 C 0.283 3.717 5 O -0.357 6.357 6 C -0.208 4.208 7 C -0.511 4.511 8 S 0.541 5.459 9 C -0.116 4.116 10 C -0.409 4.409 11 H 0.115 0.885 12 C -0.171 4.171 13 N -0.423 5.423 14 Si 0.760 3.240 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.182 1.182 18 C -0.215 4.215 19 H 0.039 0.961 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.124 0.876 24 H 0.145 0.855 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.397 -1.594 -1.184 3.112 hybrid contribution -0.795 0.990 -0.724 1.462 sum -3.192 -0.604 -1.907 3.767 Atomic orbital electron populations 1.22585 0.88408 1.02708 0.98901 1.59849 1.06919 1.09569 1.39727 1.22884 0.99211 0.91465 0.98704 1.22917 0.77985 0.86118 0.84692 1.90444 1.39919 1.37675 1.67665 1.20460 1.06246 0.95881 0.98233 1.25435 1.15277 1.05794 1.04612 1.83362 1.40331 1.00856 1.21314 1.21307 0.99928 0.93270 0.97119 1.19080 1.18951 0.91554 1.11296 0.88511 1.26164 0.95161 1.01262 0.94514 1.68762 1.32263 1.25698 1.15582 0.85769 0.79860 0.78897 0.79454 1.19054 1.19843 1.18216 1.18494 1.11423 0.94661 0.96967 0.96060 0.92633 0.90537 0.89592 0.87574 0.85529 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.18 60.07 0.55 0.94 15 2 N -0.44 -9.46 5.24 -179.68 -0.94 -10.40 15 3 C 0.01 0.12 6.97 -4.98 -0.03 0.09 15 4 C 0.40 9.25 7.98 -30.20 -0.24 9.01 15 5 O -0.48 -11.58 18.03 5.48 0.10 -11.49 15 6 C -0.19 -4.77 6.56 -105.24 -0.69 -5.46 15 7 C -0.37 -9.06 11.03 30.80 0.34 -8.72 15 8 S 0.28 6.52 19.90 -107.50 -2.14 4.38 15 9 C 0.01 0.15 6.19 -38.33 -0.24 -0.09 15 10 C -0.37 -8.93 8.97 -38.39 -0.34 -9.27 15 11 H 0.10 2.24 6.42 -52.49 -0.34 1.90 15 12 C 0.05 1.06 5.49 -17.26 -0.09 0.96 15 13 N -0.79 -17.98 10.64 55.55 0.59 -17.39 15 14 Si 0.94 16.85 29.57 -169.99 -5.03 11.82 15 15 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 16 H -0.27 -4.80 7.11 56.52 0.40 -4.39 15 17 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 18 C -0.12 -2.85 6.04 -82.97 -0.50 -3.35 15 19 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.08 1.45 6.37 -51.93 -0.33 1.12 15 22 H 0.09 1.42 7.58 -51.93 -0.39 1.03 15 23 H 0.11 1.80 8.14 -51.93 -0.42 1.38 15 24 H 0.13 2.91 8.06 -52.49 -0.42 2.48 15 25 H 0.30 6.07 8.30 -40.82 -0.34 5.73 15 LS Contribution 234.26 15.07 3.53 3.53 Total: -1.00 -27.37 234.26 -7.03 -34.40 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -1.89 Total: 1.06 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.25 Total: -15.90 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: -0.35 Total: -27.79 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.10 Total: -11.49 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -2.14 Total: 4.38 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.37 -7.03 -34.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287547.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.586 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds