Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00110 * 2 1 4 4 C 1.50927 * 105.21537 * 121.90404 * 3 2 1 5 5 O 1.21544 * 126.85550 * 180.02562 * 4 3 2 6 6 C 1.41799 * 106.28158 * 359.95642 * 4 3 2 7 7 S 1.76434 * 139.61022 * 179.97438 * 6 4 3 8 8 C 1.75504 * 91.41310 * 180.02562 * 7 6 4 9 9 C 1.39601 * 125.05619 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00415 * 190.25549 * 9 8 7 11 11 C 1.40536 * 120.00168 * 10.24633 * 9 8 7 12 12 N 1.30523 * 120.00250 * 175.00299 * 11 9 8 13 13 Si 1.86807 * 119.99964 * 355.00650 * 11 9 8 14 14 H 1.48500 * 109.46997 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.46936 * 299.99831 * 13 11 9 16 16 H 1.48491 * 109.47125 * 59.99531 * 13 11 9 17 17 C 1.37859 * 109.88638 * 0.24186 * 8 7 6 18 18 C 1.38176 * 115.11993 * 359.56158 * 17 8 7 19 19 H 1.09000 * 109.47163 * 299.89841 * 1 2 3 20 20 H 1.08999 * 109.46831 * 59.90351 * 1 2 3 21 21 H 1.09006 * 109.47082 * 179.89931 * 1 2 3 22 22 H 1.09000 * 110.29954 * 240.81372 * 3 2 1 23 23 H 1.08998 * 110.29336 * 2.84501 * 3 2 1 24 24 H 0.97001 * 120.00381 * 359.23410 * 12 11 9 25 25 H 1.07999 * 122.44254 * 179.75614 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 2.8558 1.4648 1.2364 5 8 3.4815 2.4348 1.6171 6 6 2.7872 0.1961 1.8658 7 16 3.4178 -0.6336 3.2895 8 6 2.5658 -2.1071 2.8619 9 6 2.5991 -3.2943 3.5955 10 1 2.1827 -4.1991 3.1779 11 6 3.1748 -3.3123 4.8774 12 7 3.1195 -4.3962 5.6026 13 14 4.0192 -1.7849 5.5436 14 1 4.5403 -2.0620 6.9063 15 1 5.1450 -1.4121 4.6499 16 1 3.0440 -0.6667 5.6039 17 6 1.8634 -1.9196 1.6905 18 6 1.9723 -0.6583 1.1368 19 1 -0.3633 0.5122 0.8909 20 1 -0.3633 0.5153 -0.8891 21 1 -0.3633 -1.0277 -0.0018 22 1 2.5962 1.5453 -0.8925 23 1 1.1775 2.0898 0.0507 24 1 2.6714 -5.1858 5.2612 25 1 1.2688 -2.7006 1.2402 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289547.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = -31.769030 kcal Electronic energy + Delta-G solvation = -12812.641877 eV Core-core repulsion = 10495.404701 eV Total energy + Delta-G solvation = -2317.237176 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.47201 -38.52913 -37.00462 -35.13767 -31.75209 -30.18408 -26.69450 -26.12401 -22.83777 -21.88295 -20.48125 -19.85633 -18.03368 -16.84450 -16.80235 -16.07025 -15.63118 -15.41356 -15.11613 -14.53639 -14.45082 -14.33890 -14.04833 -13.25046 -13.08908 -12.70307 -12.44053 -12.36540 -12.10730 -11.71300 -11.02527 -10.45393 -10.28695 -9.85747 -9.52787 -8.64414 -6.92573 -0.16836 0.74041 1.15706 1.21590 1.42062 1.58086 1.92886 2.03138 2.15373 2.67998 2.86078 3.60189 4.12339 4.15268 4.40648 4.51769 4.66181 4.80573 4.91116 4.95899 5.00267 5.12847 5.32301 5.53409 5.68570 5.92680 6.12911 6.27829 6.90815 7.51781 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.041250 B = 0.011187 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.627262 B = 2502.195083 C = 3094.820718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.474 5.474 3 C 0.015 3.985 4 C 0.394 3.606 5 O -0.556 6.556 6 C -0.537 4.537 7 S 0.007 5.993 8 C 0.052 3.948 9 C -0.401 4.401 10 H 0.101 0.899 11 C 0.033 3.967 12 N -0.765 5.765 13 Si 0.930 3.070 14 H -0.196 1.196 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.341 4.341 18 C 0.207 3.793 19 H 0.033 0.967 20 H 0.110 0.890 21 H 0.078 0.922 22 H 0.133 0.867 23 H 0.123 0.877 24 H 0.301 0.699 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 2.323 -3.962 6.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.191 5.191 3 C -0.114 4.114 4 C 0.286 3.714 5 O -0.446 6.446 6 C -0.652 4.652 7 S 0.261 5.739 8 C -0.069 4.069 9 C -0.437 4.437 10 H 0.119 0.881 11 C -0.194 4.194 12 N -0.384 5.384 13 Si 0.749 3.251 14 H -0.118 1.118 15 H -0.125 1.125 16 H -0.124 1.124 17 C -0.365 4.365 18 C 0.100 3.900 19 H 0.052 0.948 20 H 0.128 0.872 21 H 0.097 0.903 22 H 0.150 0.850 23 H 0.141 0.859 24 H 0.114 0.886 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.075 3.480 -1.910 4.479 hybrid contribution -1.902 -1.203 -1.818 2.893 sum -3.977 2.277 -3.729 5.908 Atomic orbital electron populations 1.22649 0.82889 1.03942 1.02565 1.60155 1.10911 1.13439 1.34596 1.23031 1.00464 0.89254 0.98658 1.20647 0.79978 0.84950 0.85851 1.90460 1.44850 1.38892 1.70362 1.24633 1.27594 1.03474 1.09534 1.84184 1.54615 1.07557 1.27548 1.21764 0.94288 0.95094 0.95716 1.20820 1.27128 0.95578 1.00153 0.88072 1.28206 0.93965 1.04420 0.92844 1.70468 1.26932 1.02865 1.38150 0.84433 0.82632 0.73718 0.84352 1.11769 1.12534 1.12447 1.19047 1.17893 0.96603 1.02989 1.19573 0.91365 0.92720 0.86384 0.94841 0.87161 0.90315 0.84979 0.85886 0.88606 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.22 127.69 1.18 1.85 15 2 N -0.47 -16.85 5.33 -724.00 -3.86 -20.71 15 3 C 0.02 0.51 7.01 85.64 0.60 1.11 15 4 C 0.39 17.99 7.69 26.64 0.20 18.20 15 5 O -0.56 -28.42 18.04 -3.85 -0.07 -28.49 15 6 C -0.54 -26.14 7.14 23.28 0.17 -25.98 15 7 S 0.01 0.35 15.38 -56.49 -0.87 -0.52 15 8 C 0.05 2.49 5.98 22.51 0.13 2.63 15 9 C -0.40 -18.75 9.71 23.16 0.22 -18.53 15 10 H 0.10 4.67 8.06 -2.91 -0.02 4.65 15 11 C 0.03 1.47 5.53 85.45 0.47 1.94 15 12 N -0.76 -34.06 13.64 21.93 0.30 -33.76 15 13 Si 0.93 36.71 24.50 68.60 1.68 38.39 15 14 H -0.20 -6.89 7.11 99.48 0.71 -6.18 15 15 H -0.20 -7.90 6.31 97.37 0.61 -7.29 15 16 H -0.20 -7.97 6.35 98.00 0.62 -7.35 15 17 C -0.34 -15.63 10.16 22.17 0.23 -15.40 15 18 C 0.21 9.17 6.10 37.83 0.23 9.40 15 19 H 0.03 0.93 8.14 -2.39 -0.02 0.91 15 20 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 21 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 22 H 0.13 3.83 8.14 -2.39 -0.02 3.81 15 23 H 0.12 3.31 7.59 -2.39 -0.02 3.29 15 24 H 0.30 12.74 8.72 -92.71 -0.81 11.93 15 25 H 0.13 5.36 8.06 -2.91 -0.02 5.34 15 Total: -1.00 -58.24 230.21 1.61 -56.63 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.99 Total: 13.26 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.44 Total: -24.79 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -3.56 Total: -54.48 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.07 Total: -28.49 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.68 Total: 38.39 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -0.87 Total: -0.52 kcal Total: -58.24 1.61 -56.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289547.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.861 kcal (2) G-P(sol) polarization free energy of solvation -58.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds