Wall clock time and date at job start Mon Mar 30 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00583 * 2 1 4 4 H 1.48501 * 109.47288 * 270.00316 * 3 2 1 5 5 H 1.48509 * 109.46832 * 29.99820 * 3 2 1 6 6 H 1.48498 * 109.47224 * 149.99615 * 3 2 1 7 7 C 1.37881 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99945 * 0.27544 * 7 2 1 10 10 H 1.08997 * 109.47024 * 299.72406 * 9 7 2 11 11 C 1.53001 * 109.46921 * 59.72670 * 9 7 2 12 12 C 1.53001 * 117.49843 * 263.70811 * 11 9 7 13 13 C 1.53001 * 117.49679 * 195.05035 * 11 9 7 14 14 C 1.52996 * 109.47000 * 179.72316 * 9 7 2 15 15 C 1.54246 * 108.89617 * 176.77555 * 14 9 7 16 16 C 1.50545 * 108.48531 * 159.17907 * 15 14 9 17 17 C 1.54069 * 112.41585 * 94.26647 * 16 15 14 18 18 C 1.54058 * 112.81754 * 318.28397 * 17 16 15 19 19 C 1.50474 * 112.49458 * 318.28045 * 18 17 16 20 20 C 1.45546 * 108.89408 * 53.98906 * 14 9 7 21 21 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 22 22 H 1.08995 * 115.55316 * 49.37633 * 11 9 7 23 23 H 1.09002 * 117.49677 * 0.02562 * 12 11 9 24 24 H 1.09001 * 117.50225 * 145.01813 * 12 11 9 25 25 H 1.09000 * 117.49755 * 214.97585 * 13 11 9 26 26 H 1.08992 * 117.50067 * 359.97407 * 13 11 9 27 27 H 1.08999 * 108.87625 * 295.38241 * 14 9 7 28 28 H 1.09001 * 109.62975 * 278.97786 * 15 14 9 29 29 H 1.09008 * 109.62290 * 39.55557 * 15 14 9 30 30 H 1.09001 * 108.92733 * 333.51161 * 16 15 14 31 31 H 1.09002 * 108.92073 * 215.02462 * 16 15 14 32 32 H 1.08999 * 108.81777 * 197.41912 * 17 16 15 33 33 H 1.09004 * 108.71996 * 79.07857 * 17 16 15 34 34 H 1.09001 * 108.87955 * 197.50582 * 18 17 16 35 35 H 1.09005 * 108.80266 * 79.00112 * 18 17 16 36 36 H 1.08996 * 109.63112 * 334.44213 * 19 18 17 37 37 H 1.09007 * 109.62944 * 213.86316 * 19 18 17 38 38 H 1.08997 * 108.89243 * 303.43768 * 20 14 9 39 39 H 1.08993 * 108.89516 * 62.03102 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0052 10 1 0.6243 -2.5608 0.8845 11 6 0.3713 -2.5747 -1.2548 12 6 -1.0952 -2.1624 -1.1124 13 6 -0.7278 -3.6387 -1.2817 14 6 2.2451 -3.6621 -0.0103 15 6 1.4622 -4.9889 0.0660 16 6 2.3467 -6.0951 -0.4444 17 6 3.1056 -6.8110 0.6892 18 6 3.6553 -5.8367 1.7485 19 6 4.2497 -4.5970 1.1370 20 6 3.1667 -3.4991 1.1043 21 1 -0.4850 0.8401 0.0004 22 1 0.8702 -2.3426 -2.1956 23 1 -1.4332 -1.8369 -0.1286 24 1 -1.5611 -1.6593 -1.9598 25 1 -0.9523 -4.1063 -2.2404 26 1 -0.8241 -4.2851 -0.4094 27 1 2.8102 -3.6388 -0.9420 28 1 1.1819 -5.1897 1.1001 29 1 0.5672 -4.9220 -0.5526 30 1 3.0705 -5.6751 -1.1429 31 1 1.7319 -6.8240 -0.9726 32 1 3.9377 -7.3679 0.2584 33 1 2.4277 -7.5128 1.1753 34 1 4.4232 -6.3456 2.3310 35 1 2.8425 -5.5466 2.4144 36 1 4.5829 -4.8129 0.1220 37 1 5.0940 -4.2605 1.7388 38 1 3.6522 -2.5267 1.0216 39 1 2.6029 -3.5336 2.0365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:39 Heat of formation + Delta-G solvation = 2.053204 kcal Electronic energy + Delta-G solvation = -16300.976399 eV Core-core repulsion = 14015.378189 eV Total energy + Delta-G solvation = -2285.598211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.88656 -36.13484 -32.95288 -31.81752 -31.39087 -27.55257 -24.36977 -23.91671 -22.33861 -21.05633 -19.31287 -18.93925 -18.73107 -16.33469 -15.18739 -14.44197 -14.31899 -14.09699 -13.57203 -13.39931 -12.68168 -12.42349 -12.21337 -11.84485 -11.55777 -11.30162 -10.96006 -10.85567 -10.49159 -10.27467 -10.20776 -10.17998 -9.97756 -9.85704 -9.48539 -9.40134 -9.25090 -9.16676 -8.42506 -8.20165 -8.06397 -5.85834 -3.94263 3.33926 3.41174 3.43953 4.49838 5.12108 5.24632 5.26606 5.32285 5.40369 5.71549 5.80064 5.83368 5.96282 6.09518 6.10769 6.14421 6.18364 6.32365 6.37291 6.55935 6.58529 6.60838 6.64293 6.66924 6.73243 6.87481 6.96433 7.05328 7.10057 7.22155 7.34455 7.35680 7.49305 7.59791 7.82920 7.95533 8.13587 8.53255 9.08263 9.69270 11.16003 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.009986 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.783325 B = 2803.236911 C = 3600.860917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.079 3.921 10 H 0.024 0.976 11 C -0.092 4.092 12 C -0.122 4.122 13 C -0.240 4.240 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.105 4.105 21 H 0.255 0.745 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -9.355 0.518 9.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.137 4.137 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.061 3.939 10 H 0.042 0.958 11 C -0.110 4.110 12 C -0.160 4.160 13 C -0.277 4.277 14 C -0.088 4.088 15 C -0.176 4.176 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.142 4.142 21 H 0.065 0.935 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.091 -9.226 0.528 9.744 hybrid contribution 0.446 1.008 -0.131 1.110 sum 3.537 -8.218 0.397 8.956 Atomic orbital electron populations 1.70057 1.05572 1.25637 1.50176 1.24971 0.94800 0.98644 0.95252 0.86762 0.79994 0.84293 0.77881 1.21001 1.21492 1.20100 1.21190 0.92705 0.90459 1.50721 0.92439 1.18389 0.91936 0.91645 0.91967 0.95795 1.22166 0.90693 0.98053 1.00124 1.22489 0.99508 0.91927 1.02028 1.23244 1.10516 0.93634 1.00302 1.19971 0.96651 0.94644 0.97504 1.21989 0.99906 0.94603 1.01059 1.21355 0.98496 0.97888 0.97396 1.21899 0.98845 0.97644 0.96707 1.21327 0.99685 0.96304 0.97912 1.21401 0.98315 0.95716 1.00340 1.20543 0.96217 0.98310 0.99108 0.93476 0.91004 0.88170 0.92159 0.91625 0.89679 0.93222 0.93141 0.89261 0.92531 0.93582 0.93316 0.93155 0.93574 0.92188 0.92348 0.93133 0.90860 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.17 9.88 55.43 0.55 -23.62 16 2 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.55 7.76 -34.44 -0.27 -13.81 16 8 H 0.06 1.51 6.21 -52.49 -0.33 1.19 16 9 C 0.08 1.89 1.49 -91.77 -0.14 1.75 16 10 H 0.02 0.64 8.05 -51.93 -0.42 0.22 16 11 C -0.09 -2.12 4.36 -90.62 -0.40 -2.52 16 12 C -0.12 -2.79 8.23 -26.69 -0.22 -3.01 16 13 C -0.24 -4.80 8.17 -26.69 -0.22 -5.02 16 14 C -0.07 -1.39 1.32 -93.48 -0.12 -1.51 16 15 C -0.14 -2.43 4.66 -27.31 -0.13 -2.56 16 16 C -0.11 -1.72 5.32 -27.40 -0.15 -1.86 16 17 C -0.11 -1.53 5.85 -25.62 -0.15 -1.68 16 18 C -0.11 -1.63 5.32 -27.44 -0.15 -1.77 16 19 C -0.12 -1.88 5.61 -27.34 -0.15 -2.04 16 20 C -0.10 -1.99 4.27 -29.59 -0.13 -2.11 16 21 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 22 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 23 H 0.10 2.49 7.26 -51.93 -0.38 2.11 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.64 6.41 -51.93 -0.33 1.31 16 27 H 0.05 1.03 7.46 -51.93 -0.39 0.65 16 28 H 0.05 0.89 6.96 -51.93 -0.36 0.52 16 29 H 0.09 1.61 3.36 -51.92 -0.17 1.44 16 30 H 0.06 0.88 6.63 -51.93 -0.34 0.54 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.90 6.62 -51.93 -0.34 0.55 16 36 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.53 5.85 -51.93 -0.30 1.23 16 39 H 0.05 0.96 7.46 -51.93 -0.39 0.57 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -26.23 281.09 -9.18 -35.41 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.64 Total: 2.35 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: -2.30 Total: -34.48 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.55 Total: -23.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.23 -9.18 -35.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.458 kcal (2) G-P(sol) polarization free energy of solvation -26.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds