Wall clock time and date at job start Mon Mar 30 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00583 * 2 1 4 4 H 1.48501 * 109.47288 * 270.00316 * 3 2 1 5 5 H 1.48509 * 109.46832 * 29.99820 * 3 2 1 6 6 H 1.48498 * 109.47224 * 149.99615 * 3 2 1 7 7 C 1.37881 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99945 * 0.27544 * 7 2 1 10 10 H 1.08997 * 109.47024 * 299.72406 * 9 7 2 11 11 C 1.53001 * 109.46921 * 59.72670 * 9 7 2 12 12 C 1.53001 * 117.49843 * 263.70811 * 11 9 7 13 13 C 1.53001 * 117.49679 * 195.05035 * 11 9 7 14 14 C 1.52996 * 109.47000 * 179.72316 * 9 7 2 15 15 C 1.54246 * 108.89617 * 176.77555 * 14 9 7 16 16 C 1.50545 * 108.48531 * 159.17907 * 15 14 9 17 17 C 1.54069 * 112.41585 * 94.26647 * 16 15 14 18 18 C 1.54058 * 112.81754 * 318.28397 * 17 16 15 19 19 C 1.50474 * 112.49458 * 318.28045 * 18 17 16 20 20 C 1.45546 * 108.89408 * 53.98906 * 14 9 7 21 21 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 22 22 H 1.08995 * 115.55316 * 49.37633 * 11 9 7 23 23 H 1.09002 * 117.49677 * 0.02562 * 12 11 9 24 24 H 1.09001 * 117.50225 * 145.01813 * 12 11 9 25 25 H 1.09000 * 117.49755 * 214.97585 * 13 11 9 26 26 H 1.08992 * 117.50067 * 359.97407 * 13 11 9 27 27 H 1.08999 * 108.87625 * 295.38241 * 14 9 7 28 28 H 1.09001 * 109.62975 * 278.97786 * 15 14 9 29 29 H 1.09008 * 109.62290 * 39.55557 * 15 14 9 30 30 H 1.09001 * 108.92733 * 333.51161 * 16 15 14 31 31 H 1.09002 * 108.92073 * 215.02462 * 16 15 14 32 32 H 1.08999 * 108.81777 * 197.41912 * 17 16 15 33 33 H 1.09004 * 108.71996 * 79.07857 * 17 16 15 34 34 H 1.09001 * 108.87955 * 197.50582 * 18 17 16 35 35 H 1.09005 * 108.80266 * 79.00112 * 18 17 16 36 36 H 1.08996 * 109.63112 * 334.44213 * 19 18 17 37 37 H 1.09007 * 109.62944 * 213.86316 * 19 18 17 38 38 H 1.08997 * 108.89243 * 303.43768 * 20 14 9 39 39 H 1.08993 * 108.89516 * 62.03102 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0052 10 1 0.6243 -2.5608 0.8845 11 6 0.3713 -2.5747 -1.2548 12 6 -1.0952 -2.1624 -1.1124 13 6 -0.7278 -3.6387 -1.2817 14 6 2.2451 -3.6621 -0.0103 15 6 1.4622 -4.9889 0.0660 16 6 2.3467 -6.0951 -0.4444 17 6 3.1056 -6.8110 0.6892 18 6 3.6553 -5.8367 1.7485 19 6 4.2497 -4.5970 1.1370 20 6 3.1667 -3.4991 1.1043 21 1 -0.4850 0.8401 0.0004 22 1 0.8702 -2.3426 -2.1956 23 1 -1.4332 -1.8369 -0.1286 24 1 -1.5611 -1.6593 -1.9598 25 1 -0.9523 -4.1063 -2.2404 26 1 -0.8241 -4.2851 -0.4094 27 1 2.8102 -3.6388 -0.9420 28 1 1.1819 -5.1897 1.1001 29 1 0.5672 -4.9220 -0.5526 30 1 3.0705 -5.6751 -1.1429 31 1 1.7319 -6.8240 -0.9726 32 1 3.9377 -7.3679 0.2584 33 1 2.4277 -7.5128 1.1753 34 1 4.4232 -6.3456 2.3310 35 1 2.8425 -5.5466 2.4144 36 1 4.5829 -4.8129 0.1220 37 1 5.0940 -4.2605 1.7388 38 1 3.6522 -2.5267 1.0216 39 1 2.6029 -3.5336 2.0365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:39 Heat of formation + Delta-G solvation = -8.997853 kcal Electronic energy + Delta-G solvation = -16301.455609 eV Core-core repulsion = 14015.378189 eV Total energy + Delta-G solvation = -2286.077420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41500 -37.75265 -34.74267 -33.54776 -32.71751 -29.29929 -25.96970 -25.41630 -23.92719 -22.76760 -20.89246 -20.76861 -19.97153 -18.32920 -16.70845 -16.25050 -15.96169 -15.41607 -15.13849 -14.97189 -14.20140 -14.05032 -13.75069 -13.39645 -12.93269 -12.84452 -12.80771 -12.60527 -12.16452 -12.01583 -11.95132 -11.70960 -11.39394 -11.16220 -11.07827 -10.94950 -10.93959 -10.85179 -10.40468 -9.98263 -9.90409 -7.92732 -6.07106 1.40362 1.42835 1.50671 2.48140 3.28469 3.47707 3.89899 4.04068 4.15144 4.30797 4.45537 4.52225 4.55259 4.58212 4.64873 4.70430 4.77290 4.93377 4.95550 5.03464 5.09751 5.12824 5.28790 5.34336 5.42260 5.43647 5.46929 5.53569 5.56157 5.66361 5.68064 5.71422 5.74514 5.81916 5.89132 6.09716 6.16680 6.52577 7.02230 7.58071 9.06303 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.009986 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.783325 B = 2803.236911 C = 3600.860917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.019 3.981 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.081 3.919 10 H -0.010 1.010 11 C -0.110 4.110 12 C -0.134 4.134 13 C -0.198 4.198 14 C -0.061 4.061 15 C -0.130 4.130 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.102 4.102 21 H 0.253 0.747 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -11.243 0.233 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.062 3.938 10 H 0.008 0.992 11 C -0.129 4.129 12 C -0.172 4.172 13 C -0.234 4.234 14 C -0.080 4.080 15 C -0.167 4.167 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.139 4.139 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.891 -11.120 0.244 11.784 hybrid contribution 0.192 1.625 -0.026 1.636 sum 4.083 -9.496 0.218 10.338 Atomic orbital electron populations 1.70201 1.06441 1.25938 1.50833 1.25630 0.95639 1.01445 0.95401 0.85881 0.78943 0.80928 0.77745 1.20806 1.21417 1.19734 1.21525 0.92740 0.91944 1.50240 0.92971 1.18306 0.92238 0.92387 0.90845 0.99235 1.22015 0.90864 1.01025 0.98992 1.22329 0.99398 0.94716 1.00711 1.23242 1.06084 0.92011 1.02085 1.19879 0.96013 0.94724 0.97341 1.21869 0.99846 0.93986 1.01035 1.21314 0.98305 0.97353 0.98044 1.21887 0.99548 0.97454 0.95950 1.21314 0.99947 0.95821 0.98163 1.21322 0.97341 0.95191 1.01055 1.20471 0.96851 0.98508 0.98082 0.93781 0.92343 0.90724 0.92056 0.88830 0.88631 0.94100 0.93311 0.89749 0.93074 0.91819 0.91493 0.91864 0.91306 0.93319 0.91998 0.92020 0.93603 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.77 9.88 21.45 0.21 -50.55 16 2 C 0.02 1.03 5.30 84.66 0.45 1.48 16 3 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.53 -28.64 7.76 25.60 0.20 -28.44 16 8 H 0.05 2.83 6.21 -2.91 -0.02 2.81 16 9 C 0.08 3.96 1.49 -11.54 -0.02 3.94 16 10 H -0.01 -0.58 8.05 -2.39 -0.02 -0.60 16 11 C -0.11 -5.15 4.36 -10.79 -0.05 -5.20 16 12 C -0.13 -6.19 8.23 30.62 0.25 -5.94 16 13 C -0.20 -7.61 8.17 30.62 0.25 -7.36 16 14 C -0.06 -2.46 1.32 -12.65 -0.02 -2.47 16 15 C -0.13 -4.38 4.66 30.22 0.14 -4.24 16 16 C -0.11 -3.07 5.32 30.16 0.16 -2.91 16 17 C -0.11 -2.59 5.85 31.31 0.18 -2.41 16 18 C -0.11 -2.94 5.32 30.13 0.16 -2.78 16 19 C -0.11 -3.31 5.61 30.20 0.17 -3.14 16 20 C -0.10 -3.90 4.27 28.74 0.12 -3.77 16 21 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 22 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 23 H 0.07 3.83 7.26 -2.39 -0.02 3.81 16 24 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 26 H 0.10 3.51 6.41 -2.39 -0.02 3.49 16 27 H 0.04 1.70 7.46 -2.39 -0.02 1.68 16 28 H 0.05 1.65 6.96 -2.39 -0.02 1.63 16 29 H 0.08 2.88 3.36 -2.38 -0.01 2.88 16 30 H 0.05 1.46 6.63 -2.39 -0.02 1.44 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.36 6.62 -2.38 -0.02 1.34 16 36 H 0.06 1.80 6.98 -2.39 -0.02 1.78 16 37 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.05 1.97 5.85 -2.39 -0.01 1.96 16 39 H 0.04 1.47 7.46 -2.39 -0.02 1.46 16 Total: -1.00 -57.07 281.09 5.25 -51.83 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.00 Total: 15.79 kcal Atomic # 6 Polarization: -65.25 SS G_CDS: 2.01 Total: -63.25 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.21 Total: -50.55 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -57.07 5.25 -51.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.830 kcal (2) G-P(sol) polarization free energy of solvation -57.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds