Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99806 * 2 1 4 4 H 1.48495 * 109.47211 * 270.00014 * 3 2 1 5 5 H 1.48502 * 109.47400 * 29.99952 * 3 2 1 6 6 H 1.48500 * 109.47090 * 149.99870 * 3 2 1 7 7 C 1.37878 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99821 * 186.16992 * 7 2 1 9 9 C 1.50705 * 120.00168 * 6.16790 * 7 2 1 10 10 H 1.09005 * 109.46971 * 5.28596 * 9 7 2 11 11 C 1.52993 * 109.46978 * 245.28887 * 9 7 2 12 12 C 1.52999 * 117.50139 * 127.97147 * 11 9 7 13 13 C 1.53001 * 117.50313 * 59.30819 * 11 9 7 14 14 C 1.52997 * 109.46974 * 125.28405 * 9 7 2 15 15 C 1.50478 * 109.62415 * 180.96399 * 14 9 7 16 16 C 1.54076 * 112.49659 * 213.86056 * 15 14 9 17 17 C 1.54065 * 112.81463 * 318.28247 * 16 15 14 18 18 C 1.50475 * 112.49840 * 318.28633 * 17 16 15 19 19 C 1.54238 * 108.51308 * 94.15838 * 18 17 16 20 20 C 1.45540 * 112.40650 * 279.99589 * 19 18 17 21 21 H 0.96994 * 120.00204 * 359.97438 * 1 2 3 22 22 H 1.09002 * 115.54802 * 273.63525 * 11 9 7 23 23 H 1.09004 * 117.49631 * 359.97438 * 12 11 9 24 24 H 1.08995 * 117.50366 * 145.01974 * 12 11 9 25 25 H 1.09006 * 117.50076 * 214.97947 * 13 11 9 26 26 H 1.09001 * 117.49759 * 359.97438 * 13 11 9 27 27 H 1.08995 * 109.78106 * 60.48769 * 14 9 7 28 28 H 1.09003 * 108.87762 * 334.63621 * 15 14 9 29 29 H 1.08996 * 108.87316 * 93.18228 * 15 14 9 30 30 H 1.08993 * 108.80931 * 197.42342 * 16 15 14 31 31 H 1.09000 * 108.81291 * 79.14266 * 16 15 14 32 32 H 1.08997 * 108.87296 * 197.50867 * 17 16 15 33 33 H 1.08997 * 108.87806 * 79.06561 * 17 16 15 34 34 H 1.09003 * 109.63055 * 213.86856 * 18 17 16 35 35 H 1.09006 * 109.63005 * 334.25088 * 18 17 16 36 36 H 1.08992 * 108.89343 * 40.75745 * 19 18 17 37 37 H 1.08998 * 108.89017 * 159.24970 * 19 18 17 38 38 H 1.09008 * 108.89372 * 182.69188 * 20 19 18 39 39 H 1.09001 * 108.90269 * 301.28492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0798 -1.1968 0.1000 9 6 1.2577 -2.4954 -0.1413 10 1 0.2027 -2.2908 -0.3242 11 6 1.4037 -3.3091 1.1460 12 6 0.1232 -3.8294 1.8020 13 6 0.8978 -2.6755 2.4435 14 6 1.8340 -3.2898 -1.3151 15 6 1.0751 -4.5795 -1.4736 16 6 1.9707 -5.7343 -1.9617 17 6 2.9548 -5.3017 -3.0654 18 6 2.3188 -4.3884 -4.0782 19 6 2.5919 -2.9288 -3.6610 20 6 1.6885 -2.4725 -2.6151 21 1 -0.4850 0.8400 0.0004 22 1 2.2916 -3.9386 1.2061 23 1 -0.8234 -3.5917 1.3166 24 1 0.1686 -4.8010 2.2940 25 1 1.4526 -2.8884 3.3574 26 1 0.4613 -1.6787 2.3801 27 1 2.8870 -3.5046 -1.1334 28 1 0.6397 -4.8529 -0.5124 29 1 0.2715 -4.4293 -2.1945 30 1 1.3363 -6.5314 -2.3491 31 1 2.5391 -6.1202 -1.1155 32 1 3.3252 -6.1907 -3.5757 33 1 3.7968 -4.7853 -2.6045 34 1 2.7504 -4.5750 -5.0616 35 1 1.2442 -4.5684 -4.1099 36 1 3.6175 -2.8507 -3.3006 37 1 2.4760 -2.2850 -4.5329 38 1 1.8991 -1.4251 -2.3989 39 1 0.6623 -2.5595 -2.9721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = -24.313615 kcal Electronic energy + Delta-G solvation = -16273.252446 eV Core-core repulsion = 13986.510884 eV Total energy + Delta-G solvation = -2286.741562 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18076 -37.85347 -34.79994 -33.24265 -33.08545 -29.26623 -26.20717 -25.03483 -23.89097 -22.93737 -21.08132 -20.80169 -19.72936 -18.28940 -16.68437 -16.41462 -15.63454 -15.47393 -15.23558 -15.09820 -14.35813 -14.05648 -13.65189 -13.45580 -13.06851 -12.88317 -12.79722 -12.54068 -12.35158 -12.17665 -11.75116 -11.55711 -11.41926 -11.31739 -11.18186 -10.95278 -10.89179 -10.71530 -10.52688 -10.24382 -10.11335 -8.02389 -6.05033 1.38598 1.41458 1.48949 2.46544 3.23178 3.39369 3.87977 4.00521 4.16075 4.24440 4.47040 4.48238 4.51786 4.53323 4.55301 4.67113 4.78275 4.87509 4.91737 5.02347 5.04603 5.11908 5.27880 5.29640 5.34101 5.42346 5.47900 5.53044 5.58881 5.60041 5.65558 5.70163 5.75073 5.79078 5.85837 6.07842 6.13156 6.54205 7.10830 7.56659 9.05443 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.011282 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.337139 B = 2481.279284 C = 3350.547982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.492 4.492 8 H 0.040 0.960 9 C 0.061 3.939 10 H 0.030 0.970 11 C -0.123 4.123 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.056 4.056 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.100 4.100 21 H 0.255 0.745 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -9.898 -4.338 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.042 3.958 10 H 0.048 0.952 11 C -0.142 4.142 12 C -0.216 4.216 13 C -0.216 4.216 14 C -0.075 4.075 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.138 4.138 21 H 0.065 0.935 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.644 -9.769 -4.336 11.292 hybrid contribution 0.113 1.545 0.252 1.570 sum 3.757 -8.224 -4.084 9.921 Atomic orbital electron populations 1.70037 1.06905 1.26477 1.52983 1.25472 0.95298 1.01374 0.95403 0.85981 0.79093 0.81160 0.78010 1.20458 1.21587 1.19524 1.21195 0.92700 0.91841 1.47346 0.94128 1.18613 0.96798 0.91363 0.89045 0.95182 1.22457 0.95620 1.00724 0.95381 1.22941 0.95856 0.97771 1.05047 1.22636 1.05036 0.96856 0.97114 1.20762 0.98273 0.93753 0.94730 1.21438 0.98157 0.95008 1.00324 1.21867 0.97637 0.97099 0.98071 1.21309 0.98263 0.99409 0.96236 1.21300 1.00960 0.93829 0.98677 1.20470 0.99388 0.97139 0.97729 1.20311 0.98041 0.99998 0.95411 0.93550 0.89400 0.91213 0.87788 0.89022 0.91857 0.93391 0.92477 0.94021 0.91671 0.92429 0.90942 0.93042 0.90775 0.92358 0.92823 0.92953 0.94143 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.80 12.64 21.45 0.27 -53.52 16 2 C 0.02 1.22 5.45 84.65 0.46 1.69 16 3 Si 0.93 44.19 29.54 68.60 2.03 46.22 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.49 -26.38 6.43 25.60 0.16 -26.22 16 8 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 9 C 0.06 2.91 1.79 -11.54 -0.02 2.89 16 10 H 0.03 1.67 6.72 -2.38 -0.02 1.65 16 11 C -0.12 -5.25 3.99 -10.80 -0.04 -5.29 16 12 C -0.18 -6.86 9.39 30.62 0.29 -6.57 16 13 C -0.18 -7.65 9.85 30.62 0.30 -7.35 16 14 C -0.06 -2.29 1.42 -11.19 -0.02 -2.30 16 15 C -0.11 -3.84 4.75 30.14 0.14 -3.70 16 16 C -0.11 -2.95 5.85 31.32 0.18 -2.77 16 17 C -0.11 -2.90 5.31 30.14 0.16 -2.74 16 18 C -0.11 -2.92 5.60 30.20 0.17 -2.75 16 19 C -0.11 -3.56 5.26 28.74 0.15 -3.41 16 20 C -0.10 -4.08 4.63 28.74 0.13 -3.95 16 21 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 22 H 0.09 3.48 8.11 -2.39 -0.02 3.46 16 23 H 0.07 2.88 8.05 -2.39 -0.02 2.86 16 24 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 25 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 26 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.05 1.95 6.98 -2.39 -0.02 1.93 16 28 H 0.06 2.01 5.88 -2.39 -0.01 2.00 16 29 H 0.04 1.46 6.63 -2.39 -0.02 1.45 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.40 6.63 -2.39 -0.02 1.38 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.60 6.99 -2.38 -0.02 1.59 16 36 H 0.05 1.74 7.47 -2.39 -0.02 1.72 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.93 6.67 -2.38 -0.02 1.92 16 39 H 0.03 1.27 7.47 -2.39 -0.02 1.25 16 Total: -1.00 -57.81 292.08 5.36 -52.45 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.99 Total: 17.32 kcal Atomic # 6 Polarization: -64.55 SS G_CDS: 2.08 Total: -62.47 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.27 Total: -53.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -57.81 5.36 -52.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.139 kcal (2) G-P(sol) polarization free energy of solvation -57.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds