Wall clock time and date at job start Mon Mar 30 2020 03:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47215 * 120.00473 * 2 1 3 5 5 H 1.07995 * 120.00230 * 120.00053 * 4 2 1 6 6 C 1.37875 * 120.00055 * 299.99736 * 4 2 1 7 7 N 1.31522 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00169 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47246 * 60.00221 * 8 6 4 10 10 H 1.48504 * 109.47217 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47305 * 300.00058 * 8 6 4 12 12 C 1.50700 * 109.47444 * 240.00533 * 2 1 3 13 13 C 1.32238 * 124.53786 * 120.01720 * 12 2 1 14 14 C 1.45108 * 114.57972 * 180.02562 * 13 12 2 15 15 N 1.37415 * 141.06656 * 180.02562 * 14 13 12 16 16 C 1.29611 * 108.76201 * 180.02562 * 15 14 13 17 17 O 1.34050 * 109.76324 * 359.97438 * 16 15 14 18 18 C 1.35567 * 107.99264 * 0.02562 * 17 16 15 19 19 S 1.75440 * 124.53151 * 300.02935 * 12 2 1 20 20 H 1.08996 * 109.46913 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46678 * 299.99895 * 1 2 3 22 22 H 1.08999 * 109.46805 * 59.99192 * 1 2 3 23 23 H 0.97003 * 120.00246 * 179.97438 * 7 6 4 24 24 H 1.08003 * 122.71033 * 0.04546 * 13 12 2 25 25 H 1.07997 * 125.11907 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1212 4.0081 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2305 13 6 2.7962 -0.1559 -2.1569 14 6 3.1538 -1.0385 -3.2518 15 7 3.8686 -1.0504 -4.4253 16 6 3.7761 -2.2284 -4.9578 17 8 3.0206 -3.0185 -4.1820 18 6 2.6208 -2.2929 -3.1089 19 16 1.6821 -2.3833 -1.6258 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 0.7082 1.1607 3.4845 24 1 3.1272 0.8707 -2.1027 25 1 4.2389 -2.5286 -5.8863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297977.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:30 Heat of formation + Delta-G solvation = 45.204082 kcal Electronic energy + Delta-G solvation = -12570.827264 eV Core-core repulsion = 10256.927893 eV Total energy + Delta-G solvation = -2313.899372 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.73906 -36.57435 -34.40968 -33.07768 -30.78920 -27.63583 -25.28005 -23.26913 -22.79612 -20.69936 -19.48699 -17.96075 -16.51297 -16.35115 -15.64402 -14.91114 -14.37959 -14.25087 -13.06600 -12.72749 -12.13932 -11.86135 -11.47856 -11.10913 -11.01270 -10.80256 -10.68748 -10.43026 -10.30814 -10.07927 -9.86782 -9.18900 -8.50599 -8.00395 -7.62889 -6.14650 -4.23391 1.11128 1.46260 2.08045 2.49430 3.26233 3.30855 3.33032 3.40073 3.52923 4.12185 4.34179 5.17199 5.18104 5.45821 5.81421 6.14871 6.43198 6.53432 6.70014 6.72781 6.97975 7.02916 7.50011 7.69879 7.77074 7.91527 8.16917 8.77925 9.42791 10.90915 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.049811 B = 0.007725 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.994643 B = 3623.715685 C = 3757.561057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.101 3.899 3 H 0.055 0.945 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.093 4.093 13 C -0.129 4.129 14 C 0.008 3.992 15 N -0.464 5.464 16 C 0.186 3.814 17 O -0.188 6.188 18 C -0.146 4.146 19 S 0.224 5.776 20 H 0.030 0.970 21 H 0.092 0.908 22 H 0.015 0.985 23 H 0.264 0.736 24 H 0.147 0.853 25 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -5.265 -9.290 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.080 3.920 3 H 0.073 0.927 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.211 4.211 13 C -0.158 4.158 14 C -0.116 4.116 15 N -0.194 5.194 16 C -0.048 4.048 17 O -0.077 6.077 18 C -0.311 4.311 19 S 0.482 5.518 20 H 0.049 0.951 21 H 0.111 0.889 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.165 0.835 25 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.953 -5.772 -8.718 10.499 hybrid contribution 1.006 0.074 0.149 1.020 sum 1.958 -5.698 -8.569 10.475 Atomic orbital electron populations 1.21869 0.96859 0.99668 1.01125 1.17681 0.93135 0.95340 0.85802 0.92735 1.21050 1.32230 1.12922 0.89643 0.92071 1.24924 0.94701 0.94877 0.99022 1.69857 1.35985 1.22589 1.23970 0.86576 0.79381 0.79812 0.81870 1.20065 1.21141 1.20024 1.25168 0.99919 0.95150 1.00822 1.19788 1.03625 1.00460 0.91906 1.21182 1.01245 0.93545 0.95658 1.70460 1.20254 1.21492 1.07160 1.27989 0.94563 0.84322 0.97935 1.84430 1.55156 1.40366 1.27773 1.26269 1.11337 0.95338 0.98133 1.84269 1.49268 1.12083 1.06153 0.95090 0.88896 0.96551 0.92565 0.83508 0.73252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.88 37.16 0.33 -2.78 15 2 C 0.10 2.39 2.65 -92.92 -0.25 2.15 15 3 H 0.05 1.38 8.07 -51.92 -0.42 0.96 15 4 C -0.52 -13.45 8.43 -34.44 -0.29 -13.74 15 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.89 -23.89 11.32 55.43 0.63 -23.26 15 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 15 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 12 C -0.09 -1.97 4.97 -36.24 -0.18 -2.15 15 13 C -0.13 -2.63 10.21 -38.79 -0.40 -3.02 15 14 C 0.01 0.15 7.88 -83.07 -0.65 -0.50 15 15 N -0.46 -8.28 11.38 -11.68 -0.13 -8.41 15 16 C 0.19 2.56 13.15 51.83 0.68 3.24 15 17 O -0.19 -3.08 10.80 2.75 0.03 -3.05 15 18 C -0.15 -2.75 8.61 30.30 0.26 -2.49 15 19 S 0.22 4.24 22.80 -107.50 -2.45 1.79 15 20 H 0.03 0.66 7.94 -51.93 -0.41 0.25 15 21 H 0.09 2.30 6.07 -51.93 -0.32 1.99 15 22 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 24 H 0.15 2.80 8.06 -52.48 -0.42 2.38 15 25 H 0.25 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 239.62 15.07 3.61 3.61 Total: -1.00 -28.90 239.62 -5.88 -34.78 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: -1.96 Total: -3.24 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.59 Total: -17.63 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.49 Total: -31.67 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.03 Total: -3.05 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.45 Total: 1.79 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.90 -5.88 -34.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297977.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.987 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds