Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46796 * 2 1 4 4 N 1.46850 * 109.46173 * 119.97622 * 2 1 3 5 5 C 1.46843 * 111.20113 * 58.26585 * 4 2 1 6 6 H 1.09007 * 109.46282 * 181.74875 * 5 4 2 7 7 C 1.47194 * 109.46431 * 301.72776 * 5 4 2 8 8 N 3.55086 * 42.43761 * 148.69013 * 2 1 3 9 9 C 1.53049 * 109.57206 * 61.71291 * 5 4 2 10 10 C 1.53117 * 109.27482 * 300.91327 * 9 5 4 11 11 H 1.08998 * 109.52476 * 297.62261 * 10 9 5 12 12 C 1.50698 * 109.52188 * 177.49730 * 10 9 5 13 13 H 1.08008 * 120.00126 * 240.12953 * 12 10 9 14 14 C 1.37873 * 120.00078 * 59.85045 * 12 10 9 15 15 N 1.31510 * 120.00235 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 120.00282 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46882 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47370 * 120.00060 * 16 14 12 19 19 H 1.48496 * 109.47197 * 240.00466 * 16 14 12 20 20 C 1.53039 * 109.45898 * 240.02322 * 2 1 3 21 21 C 1.52999 * 109.50485 * 179.22505 * 20 2 1 22 22 C 1.53000 * 109.53737 * 59.12704 * 20 2 1 23 23 H 1.08992 * 109.47377 * 158.75153 * 1 2 3 24 24 H 1.09006 * 109.47027 * 278.75418 * 1 2 3 25 25 H 1.08998 * 109.47049 * 38.74871 * 1 2 3 26 26 H 1.00904 * 111.00029 * 182.37084 * 4 2 1 27 27 H 1.09004 * 109.55121 * 180.94085 * 9 5 4 28 28 H 1.08999 * 109.45155 * 60.82264 * 9 5 4 29 29 H 0.97001 * 120.00992 * 179.97438 * 15 14 12 30 30 H 1.08993 * 109.47632 * 179.80619 * 21 20 2 31 31 H 1.09008 * 109.46948 * 299.80768 * 21 20 2 32 32 H 1.09000 * 109.47080 * 59.80143 * 21 20 2 33 33 H 1.09000 * 109.46935 * 300.17666 * 22 20 2 34 34 H 1.09004 * 109.46981 * 60.17322 * 22 20 2 35 35 H 1.09001 * 109.47489 * 180.17565 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0193 -0.6918 1.1994 5 6 1.5173 -2.0705 1.2592 6 1 1.8713 -2.5466 2.1736 7 6 0.0454 -2.0573 1.2513 8 7 -1.0906 -2.0471 1.2452 9 6 2.0255 -2.8542 0.0468 10 6 1.5441 -2.1697 -1.2355 11 1 0.4547 -2.1822 -1.2683 12 6 2.0924 -2.9015 -2.4333 13 1 2.7292 -2.3854 -3.1367 14 6 1.7858 -4.2315 -2.6284 15 7 1.0145 -4.8614 -1.7694 16 14 2.4660 -5.1389 -4.1128 17 1 3.2996 -4.2123 -4.9202 18 1 3.2963 -6.2823 -3.6564 19 1 1.3423 -5.6432 -4.9424 20 6 2.0398 -0.7210 -1.2499 21 6 3.5697 -0.7047 -1.2608 22 6 1.5127 -0.0131 -2.4997 23 1 -0.3634 -0.9577 -0.3724 24 1 -0.3633 0.1564 1.0157 25 1 -0.3633 0.8015 -0.6432 26 1 3.0272 -0.6717 1.2426 27 1 1.6390 -3.8728 0.0827 28 1 3.1151 -2.8770 0.0601 29 1 0.7985 -5.7970 -1.9067 30 1 3.9323 -1.2213 -2.1494 31 1 3.9220 0.3268 -1.2710 32 1 3.9447 -1.2079 -0.3696 33 1 0.4228 -0.0238 -2.4908 34 1 1.8658 1.0181 -2.5094 35 1 1.8738 -0.5293 -3.3893 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306177823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = 19.778567 kcal Electronic energy + Delta-G solvation = -16526.045776 eV Core-core repulsion = 14137.675852 eV Total energy + Delta-G solvation = -2388.369925 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.53602 -37.32888 -35.25061 -34.54063 -32.44091 -29.96163 -28.16918 -27.41385 -25.68622 -23.22942 -22.96874 -19.73326 -18.56252 -17.40651 -16.94661 -16.44060 -16.06511 -15.25760 -15.17249 -14.53342 -14.29082 -14.03425 -14.01494 -13.43237 -13.20287 -12.94180 -12.87032 -12.79427 -12.70326 -12.55455 -12.25230 -12.10015 -11.97794 -11.60472 -11.34131 -11.04905 -11.02017 -10.50074 -10.26531 -9.18496 -8.00564 -6.12265 1.38956 1.44018 1.51766 1.89032 1.99984 2.46100 3.17334 3.27205 3.51712 4.04920 4.13953 4.30801 4.41963 4.56354 4.58572 4.66433 4.69743 4.96855 4.99856 5.04318 5.15468 5.20477 5.25403 5.30409 5.40490 5.58423 5.62125 5.65234 5.73687 5.96173 6.07806 6.26870 6.46008 6.57434 6.81773 6.99294 7.54926 9.01159 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.012145 C = 0.010349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.957169 B = 2304.969430 C = 2704.817282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 H 0.103 0.897 4 N -0.658 5.658 5 C 0.175 3.825 6 H 0.144 0.856 7 C 0.261 3.739 8 N -0.502 5.502 9 C -0.132 4.132 10 C 0.060 3.940 11 H -0.014 1.014 12 C -0.504 4.504 13 H 0.060 0.940 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.939 3.061 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.295 1.295 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.124 4.124 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.368 0.632 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.255 0.745 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 8.298 4.123 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.014 4.014 3 H 0.121 0.879 4 N -0.292 5.292 5 C 0.062 3.938 6 H 0.162 0.838 7 C -0.055 4.055 8 N -0.181 5.181 9 C -0.173 4.173 10 C 0.041 3.959 11 H 0.004 0.996 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.222 1.222 20 C -0.090 4.090 21 C -0.183 4.183 22 C -0.182 4.182 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.191 0.809 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.712 8.408 4.577 10.670 hybrid contribution 0.645 -1.561 -1.821 2.484 sum 5.357 6.847 2.756 9.120 Atomic orbital electron populations 1.22489 0.96898 1.01756 1.00884 1.21614 0.93798 0.98192 0.87752 0.87871 1.60848 1.16821 1.12243 1.39289 1.19429 0.80526 0.91915 1.01902 0.83839 1.29132 0.95609 0.90476 0.90284 1.81086 1.14685 1.10733 1.11559 1.22235 1.00436 1.01054 0.93576 1.18659 0.93541 0.90676 0.92983 0.99591 1.21566 1.29078 0.94923 1.08706 0.92238 1.25618 0.95748 0.98900 0.98273 1.70012 1.38210 1.10548 1.37144 0.85794 0.77919 0.78934 0.80692 1.19007 1.20880 1.22172 1.21208 0.96636 0.96054 0.95087 1.21755 0.93605 1.00947 1.01995 1.21678 0.99359 0.99364 0.97778 0.93579 0.93031 0.92124 0.80901 0.91567 0.90708 0.93612 0.93634 0.91803 0.92180 0.95064 0.91680 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 6.29 71.98 0.45 -5.26 16 2 C 0.10 2.88 2.73 44.94 0.12 3.00 16 3 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 4 N -0.66 -17.72 6.47 -478.90 -3.10 -20.82 16 5 C 0.17 5.62 3.55 43.14 0.15 5.77 16 6 H 0.14 3.61 8.14 -2.38 -0.02 3.59 16 7 C 0.26 10.35 9.82 89.44 0.88 11.23 16 8 N -0.50 -22.16 16.70 20.00 0.33 -21.83 16 9 C -0.13 -5.27 4.24 30.65 0.13 -5.14 16 10 C 0.06 2.64 1.07 -11.46 -0.01 2.63 16 11 H -0.01 -0.74 5.72 -2.39 -0.01 -0.76 16 12 C -0.50 -25.17 7.12 25.60 0.18 -24.99 16 13 H 0.06 2.93 5.70 -2.91 -0.02 2.91 16 14 C 0.01 0.66 5.30 84.65 0.45 1.11 16 15 N -0.92 -51.53 11.34 21.45 0.24 -51.28 16 16 Si 0.94 42.48 29.54 68.60 2.03 44.51 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 C -0.09 -3.02 0.30 -52.13 -0.02 -3.04 16 21 C -0.13 -3.70 7.58 71.98 0.55 -3.15 16 22 C -0.12 -4.27 7.97 71.98 0.57 -3.70 16 23 H 0.05 1.96 3.38 -2.39 -0.01 1.96 16 24 H 0.05 1.83 6.83 -2.38 -0.02 1.82 16 25 H 0.06 1.95 7.66 -2.39 -0.02 1.93 16 26 H 0.37 7.92 7.14 -89.69 -0.64 7.28 16 27 H 0.07 3.18 6.14 -2.39 -0.01 3.16 16 28 H 0.07 2.73 6.59 -2.39 -0.02 2.72 16 29 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.04 1.54 6.48 -2.39 -0.02 1.52 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.60 5.13 -2.39 -0.01 1.58 16 33 H 0.03 1.14 6.92 -2.39 -0.02 1.12 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.61 6.78 -2.39 -0.02 1.60 16 Total: -1.00 -60.68 256.71 3.44 -57.25 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.47 Total: 13.71 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.46 Total: -21.54 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -2.52 Total: -93.93 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.68 3.44 -57.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.028 kcal (2) G-P(sol) polarization free energy of solvation -60.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds