Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46055 * 2 1 4 4 N 1.46847 * 109.46252 * 119.98022 * 2 1 3 5 5 C 1.46843 * 111.19885 * 58.27166 * 4 2 1 6 6 H 1.09002 * 109.46722 * 301.72683 * 5 4 2 7 7 C 1.47198 * 109.46256 * 181.75354 * 5 4 2 8 8 N 4.78316 * 100.04253 * 132.96053 * 2 1 3 9 9 C 1.53039 * 109.52359 * 61.74306 * 5 4 2 10 10 C 1.53118 * 109.27582 * 300.81701 * 9 5 4 11 11 H 1.08993 * 109.52677 * 297.68455 * 10 9 5 12 12 C 1.50700 * 109.52309 * 177.55783 * 10 9 5 13 13 H 1.08003 * 120.00545 * 240.00606 * 12 10 9 14 14 C 1.37881 * 119.99872 * 60.00165 * 12 10 9 15 15 N 1.31513 * 120.00114 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99973 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46904 * 90.00315 * 16 14 12 18 18 H 1.48501 * 109.46938 * 210.00012 * 16 14 12 19 19 H 1.48494 * 109.46936 * 329.99953 * 16 14 12 20 20 C 1.53036 * 109.46123 * 240.02291 * 2 1 3 21 21 C 1.52999 * 109.50366 * 59.09864 * 20 2 1 22 22 C 1.52998 * 109.50522 * 179.22474 * 20 2 1 23 23 H 1.09001 * 109.47002 * 299.99744 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00181 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.00900 * 110.99990 * 294.17474 * 4 2 1 27 27 H 1.08997 * 109.50448 * 60.75882 * 9 5 4 28 28 H 1.08996 * 109.50392 * 180.83935 * 9 5 4 29 29 H 0.97005 * 120.00364 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46874 * 60.00775 * 21 20 2 31 31 H 1.09008 * 109.46858 * 179.97438 * 21 20 2 32 32 H 1.08992 * 109.47590 * 299.99944 * 21 20 2 33 33 H 1.09000 * 109.47278 * 59.99694 * 22 20 2 34 34 H 1.09001 * 109.46931 * 180.02562 * 22 20 2 35 35 H 1.09000 * 109.46963 * 299.99722 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0193 -0.6919 1.1993 5 6 1.5174 -2.0706 1.2589 6 1 0.4275 -2.0609 1.2530 7 6 1.9954 -2.7136 2.4937 8 7 2.3641 -3.2098 3.4468 9 6 2.0269 -2.8532 0.0464 10 6 1.5442 -2.1695 -1.2358 11 1 0.4548 -2.1831 -1.2679 12 6 2.0925 -2.9011 -2.4337 13 1 2.7268 -2.3840 -3.1386 14 6 1.7846 -4.2307 -2.6299 15 7 1.0119 -4.8602 -1.7719 16 14 2.4648 -5.1378 -4.1145 17 1 3.7723 -5.7489 -3.7648 18 1 1.5138 -6.2029 -4.5223 19 1 2.6491 -4.1826 -5.2365 20 6 2.0399 -0.7210 -1.2499 21 6 1.5118 -0.0130 -2.4992 22 6 3.5698 -0.7047 -1.2607 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7761 -0.1821 2.0354 27 1 3.1166 -2.8750 0.0591 28 1 1.6420 -3.8723 0.0832 29 1 0.7949 -5.7955 -1.9101 30 1 1.8621 1.0192 -2.5072 31 1 1.8757 -0.5267 -3.3891 32 1 0.4220 -0.0268 -2.4913 33 1 3.9448 -1.2109 -0.3712 34 1 3.9323 -1.2179 -2.1514 35 1 3.9221 0.3268 -1.2675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306177825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = 18.079552 kcal Electronic energy + Delta-G solvation = -16187.921808 eV Core-core repulsion = 13799.478209 eV Total energy + Delta-G solvation = -2388.443599 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.55408 -36.04371 -33.84025 -32.83161 -30.85200 -28.28700 -26.62284 -25.97432 -24.12183 -21.56624 -21.24907 -17.93442 -16.93554 -16.04584 -15.23184 -14.82752 -14.32396 -13.68339 -13.40488 -13.33011 -13.03462 -12.41589 -12.24779 -12.07997 -11.81904 -11.61593 -11.24425 -11.05184 -11.02987 -10.89661 -10.69102 -10.52707 -10.37518 -10.15819 -9.81731 -9.43044 -8.86987 -8.79007 -8.31850 -7.98188 -6.02514 -4.05940 3.14737 3.26260 3.30819 3.37633 3.39610 4.36907 4.42433 4.88752 5.29094 5.35020 5.56845 5.71832 5.73320 5.94210 6.04030 6.07381 6.16773 6.30791 6.47970 6.52619 6.56939 6.76242 6.85297 6.88888 7.08860 7.16296 7.21622 7.31677 7.42190 7.67924 7.75037 7.91810 8.01867 8.07610 8.41883 8.95898 9.58469 11.03931 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.011924 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.684476 B = 2347.552432 C = 3015.300769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.099 3.901 3 H 0.074 0.926 4 N -0.671 5.671 5 C 0.172 3.828 6 H 0.077 0.923 7 C 0.231 3.769 8 N -0.458 5.458 9 C -0.100 4.100 10 C 0.064 3.936 11 H 0.031 0.969 12 C -0.502 4.502 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.052 4.052 21 C -0.131 4.131 22 C -0.121 4.121 23 H 0.042 0.958 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.332 0.668 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 8.855 1.172 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.010 4.010 3 H 0.092 0.908 4 N -0.302 5.302 5 C 0.060 3.940 6 H 0.094 0.906 7 C -0.087 4.087 8 N -0.136 5.136 9 C -0.139 4.139 10 C 0.046 3.954 11 H 0.049 0.951 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.052 4.052 21 C -0.188 4.188 22 C -0.178 4.178 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.081 7.747 2.346 8.095 hybrid contribution -0.766 -0.277 -0.827 1.160 sum -0.847 7.470 1.520 7.670 Atomic orbital electron populations 1.22662 0.98185 1.03021 1.01289 1.21627 0.92053 0.96846 0.90504 0.90771 1.60461 1.63384 1.01239 1.05107 1.19438 0.97716 0.88936 0.87895 0.90562 1.29462 0.92315 0.93242 0.93654 1.81075 1.10044 1.09795 1.12646 1.21901 1.00533 1.00874 0.90579 1.18716 0.96109 0.88121 0.92485 0.95130 1.21171 1.30091 0.95023 1.07711 0.92074 1.24957 0.95065 0.97754 0.96216 1.69831 1.36763 1.10764 1.35812 0.86677 0.78802 0.79639 0.83386 1.20824 1.21439 1.19967 1.20607 0.95746 0.97591 0.91284 1.21809 1.00222 0.97879 0.98913 1.21688 0.94992 0.98750 1.02392 0.93879 0.91684 0.91141 0.85123 0.92526 0.88229 0.93013 0.94913 0.91708 0.93369 0.92104 0.92527 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 8.21 37.16 0.31 -2.38 16 2 C 0.10 1.49 2.66 -67.72 -0.18 1.31 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 N -0.67 -10.26 5.56 -102.73 -0.57 -10.84 16 5 C 0.17 2.99 2.58 -70.51 -0.18 2.81 16 6 H 0.08 1.27 6.19 -51.93 -0.32 0.95 16 7 C 0.23 4.28 14.88 -20.76 -0.31 3.97 16 8 N -0.46 -9.16 18.54 42.15 0.78 -8.38 16 9 C -0.10 -2.11 4.00 -26.65 -0.11 -2.21 16 10 C 0.06 1.37 1.15 -91.66 -0.11 1.27 16 11 H 0.03 0.71 6.56 -51.93 -0.34 0.37 16 12 C -0.50 -12.26 7.12 -34.44 -0.25 -12.50 16 13 H 0.06 1.49 5.70 -52.48 -0.30 1.19 16 14 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 15 N -0.89 -23.80 11.35 55.43 0.63 -23.17 16 16 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.05 -0.92 0.30 -154.44 -0.05 -0.97 16 21 C -0.13 -2.18 7.88 37.16 0.29 -1.89 16 22 C -0.12 -2.18 7.75 37.16 0.29 -1.89 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 25 H 0.07 1.11 4.80 -51.93 -0.25 0.86 16 26 H 0.33 4.34 8.77 -39.29 -0.34 4.00 16 27 H 0.06 1.26 6.58 -51.93 -0.34 0.92 16 28 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.18 6.79 -51.92 -0.35 0.83 16 32 H 0.05 0.78 6.41 -51.93 -0.33 0.45 16 33 H 0.06 1.15 6.01 -51.93 -0.31 0.84 16 34 H 0.06 1.09 6.50 -51.93 -0.34 0.75 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -26.09 265.89 -5.27 -31.36 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.71 Total: 2.70 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.38 Total: -11.01 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.84 Total: -42.39 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.09 -5.27 -31.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.441 kcal (2) G-P(sol) polarization free energy of solvation -26.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds