Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46055 * 2 1 4 4 N 1.46847 * 109.46252 * 119.98022 * 2 1 3 5 5 C 1.46843 * 111.19885 * 58.27166 * 4 2 1 6 6 H 1.09002 * 109.46722 * 301.72683 * 5 4 2 7 7 C 1.47198 * 109.46256 * 181.75354 * 5 4 2 8 8 N 4.78316 * 100.04253 * 132.96053 * 2 1 3 9 9 C 1.53039 * 109.52359 * 61.74306 * 5 4 2 10 10 C 1.53118 * 109.27582 * 300.81701 * 9 5 4 11 11 H 1.08993 * 109.52677 * 297.68455 * 10 9 5 12 12 C 1.50700 * 109.52309 * 177.55783 * 10 9 5 13 13 H 1.08003 * 120.00545 * 240.00606 * 12 10 9 14 14 C 1.37881 * 119.99872 * 60.00165 * 12 10 9 15 15 N 1.31513 * 120.00114 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99973 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46904 * 90.00315 * 16 14 12 18 18 H 1.48501 * 109.46938 * 210.00012 * 16 14 12 19 19 H 1.48494 * 109.46936 * 329.99953 * 16 14 12 20 20 C 1.53036 * 109.46123 * 240.02291 * 2 1 3 21 21 C 1.52999 * 109.50366 * 59.09864 * 20 2 1 22 22 C 1.52998 * 109.50522 * 179.22474 * 20 2 1 23 23 H 1.09001 * 109.47002 * 299.99744 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00181 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.00900 * 110.99990 * 294.17474 * 4 2 1 27 27 H 1.08997 * 109.50448 * 60.75882 * 9 5 4 28 28 H 1.08996 * 109.50392 * 180.83935 * 9 5 4 29 29 H 0.97005 * 120.00364 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46874 * 60.00775 * 21 20 2 31 31 H 1.09008 * 109.46858 * 179.97438 * 21 20 2 32 32 H 1.08992 * 109.47590 * 299.99944 * 21 20 2 33 33 H 1.09000 * 109.47278 * 59.99694 * 22 20 2 34 34 H 1.09001 * 109.46931 * 180.02562 * 22 20 2 35 35 H 1.09000 * 109.46963 * 299.99722 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0193 -0.6919 1.1993 5 6 1.5174 -2.0706 1.2589 6 1 0.4275 -2.0609 1.2530 7 6 1.9954 -2.7136 2.4937 8 7 2.3641 -3.2098 3.4468 9 6 2.0269 -2.8532 0.0464 10 6 1.5442 -2.1695 -1.2358 11 1 0.4548 -2.1831 -1.2679 12 6 2.0925 -2.9011 -2.4337 13 1 2.7268 -2.3840 -3.1386 14 6 1.7846 -4.2307 -2.6299 15 7 1.0119 -4.8602 -1.7719 16 14 2.4648 -5.1378 -4.1145 17 1 3.7723 -5.7489 -3.7648 18 1 1.5138 -6.2029 -4.5223 19 1 2.6491 -4.1826 -5.2365 20 6 2.0399 -0.7210 -1.2499 21 6 1.5118 -0.0130 -2.4992 22 6 3.5698 -0.7047 -1.2607 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7761 -0.1821 2.0354 27 1 3.1166 -2.8750 0.0591 28 1 1.6420 -3.8723 0.0832 29 1 0.7949 -5.7955 -1.9101 30 1 1.8621 1.0192 -2.5072 31 1 1.8757 -0.5267 -3.3891 32 1 0.4220 -0.0268 -2.4913 33 1 3.9448 -1.2109 -0.3712 34 1 3.9323 -1.2179 -2.1514 35 1 3.9221 0.3268 -1.2675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306177825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = 2.335953 kcal Electronic energy + Delta-G solvation = -16188.604502 eV Core-core repulsion = 13799.478209 eV Total energy + Delta-G solvation = -2389.126293 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98247 -37.57364 -35.43787 -34.43718 -32.47163 -29.63954 -28.15346 -27.50950 -25.71241 -23.01830 -22.79942 -19.47122 -18.37838 -17.87193 -16.64643 -16.52657 -15.82380 -15.17035 -14.94481 -14.72745 -14.42697 -14.16863 -13.69437 -13.51851 -13.31336 -12.95116 -12.86434 -12.70882 -12.56639 -12.44033 -12.19240 -12.16547 -11.93573 -11.83433 -11.28500 -11.04723 -10.51193 -10.48552 -10.16386 -9.26538 -7.98680 -6.05601 1.43636 1.47867 1.54052 1.66965 1.75392 2.50849 2.91229 3.32172 3.58317 4.09061 4.27092 4.33938 4.47968 4.52981 4.69206 4.80221 4.81581 5.10314 5.16283 5.17114 5.21571 5.36816 5.41978 5.45377 5.48434 5.68908 5.70882 5.77079 5.85083 6.04326 6.17629 6.27254 6.48999 6.59054 6.64331 7.04654 7.60503 9.05602 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.011924 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.684476 B = 2347.552432 C = 3015.300769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.104 3.896 3 H 0.103 0.897 4 N -0.670 5.670 5 C 0.186 3.814 6 H 0.090 0.910 7 C 0.245 3.755 8 N -0.483 5.483 9 C -0.091 4.091 10 C 0.065 3.935 11 H 0.011 0.989 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.934 3.066 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.268 1.268 20 C -0.053 4.053 21 C -0.127 4.127 22 C -0.115 4.115 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.352 0.648 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.255 0.745 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 11.125 1.389 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.005 4.005 3 H 0.121 0.879 4 N -0.303 5.303 5 C 0.074 3.926 6 H 0.107 0.893 7 C -0.073 4.073 8 N -0.160 5.160 9 C -0.130 4.130 10 C 0.047 3.953 11 H 0.029 0.971 12 C -0.541 4.541 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.559 5.559 16 Si 0.762 3.238 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.192 1.192 20 C -0.053 4.053 21 C -0.184 4.184 22 C -0.173 4.173 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.171 0.829 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.127 10.039 2.561 10.361 hybrid contribution -0.727 -0.962 -0.920 1.516 sum -0.853 9.077 1.641 9.263 Atomic orbital electron populations 1.22603 0.97126 1.02000 1.03013 1.21620 0.92846 0.97452 0.88613 0.87866 1.60365 1.63447 1.00111 1.06353 1.19168 0.98158 0.89775 0.85520 0.89298 1.29592 0.91583 0.92603 0.93484 1.81086 1.10872 1.10471 1.13608 1.21593 0.99124 0.99742 0.92567 1.18642 0.94729 0.90603 0.91335 0.97069 1.21552 1.29000 0.95065 1.08482 0.92381 1.25566 0.95807 0.98823 0.98201 1.69961 1.38236 1.10601 1.37092 0.85918 0.77832 0.78647 0.81397 1.21209 1.21772 1.19226 1.20574 0.95608 0.95488 0.93665 1.21751 1.00383 0.99113 0.97189 1.21610 0.95110 0.99902 1.00647 0.91210 0.90982 0.93485 0.82872 0.94290 0.91751 0.93554 0.91937 0.93981 0.93069 0.93455 0.94658 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.62 8.21 71.98 0.59 -4.03 16 2 C 0.10 2.74 2.66 44.94 0.12 2.86 16 3 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 4 N -0.67 -18.54 5.56 -478.93 -2.66 -21.21 16 5 C 0.19 6.24 2.58 43.13 0.11 6.35 16 6 H 0.09 2.83 6.19 -2.39 -0.01 2.82 16 7 C 0.25 8.84 14.88 89.44 1.33 10.17 16 8 N -0.48 -18.94 18.54 20.01 0.37 -18.56 16 9 C -0.09 -3.88 4.00 30.65 0.12 -3.75 16 10 C 0.07 2.80 1.15 -11.47 -0.01 2.79 16 11 H 0.01 0.53 6.56 -2.39 -0.02 0.51 16 12 C -0.50 -24.87 7.12 25.60 0.18 -24.68 16 13 H 0.06 2.86 5.70 -2.91 -0.02 2.84 16 14 C 0.01 0.72 5.30 84.66 0.45 1.17 16 15 N -0.92 -50.35 11.35 21.45 0.24 -50.10 16 16 Si 0.93 42.38 29.54 68.60 2.03 44.40 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.05 -1.78 0.30 -52.14 -0.02 -1.79 16 21 C -0.13 -3.93 7.88 71.98 0.57 -3.37 16 22 C -0.12 -3.95 7.75 71.98 0.56 -3.39 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.67 6.41 -2.39 -0.02 1.66 16 25 H 0.05 1.38 4.80 -2.39 -0.01 1.37 16 26 H 0.35 7.81 8.77 -89.69 -0.79 7.03 16 27 H 0.04 1.76 6.58 -2.39 -0.02 1.75 16 28 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 29 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.48 6.79 -2.38 -0.02 1.46 16 32 H 0.05 1.54 6.41 -2.39 -0.02 1.52 16 33 H 0.05 1.73 6.01 -2.39 -0.01 1.71 16 34 H 0.03 1.33 6.50 -2.39 -0.02 1.31 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -56.61 265.89 4.30 -52.31 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.32 Total: 10.83 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.00 Total: -17.66 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -2.05 Total: -89.88 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -56.61 4.30 -52.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.643 kcal (2) G-P(sol) polarization free energy of solvation -56.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds