Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48503 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46597 * 299.99411 * 3 2 1 6 6 H 1.48498 * 109.47399 * 59.99394 * 3 2 1 7 7 C 1.38826 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99878 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.76199 * 99.99964 * 185.11821 * 9 7 2 11 11 C 1.39393 * 119.94607 * 85.49335 * 10 9 7 12 12 C 1.37078 * 120.05712 * 179.97438 * 11 10 9 13 13 C 1.39850 * 119.94075 * 0.02562 * 12 11 10 14 14 C 1.47515 * 120.05237 * 179.97438 * 13 12 11 15 15 N 1.34777 * 119.99881 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00179 * 0.02562 * 14 13 12 17 17 C 1.39853 * 119.89462 * 0.25424 * 13 12 11 18 18 C 1.37083 * 119.93864 * 359.50749 * 17 13 12 19 19 H 0.96997 * 119.99861 * 0.02562 * 1 2 3 20 20 H 1.08006 * 119.97098 * 359.97438 * 11 10 9 21 21 H 1.07997 * 120.02805 * 179.97438 * 12 11 10 22 22 H 0.96996 * 120.00387 * 359.97438 * 15 14 13 23 23 H 0.97009 * 119.99675 * 179.72820 * 15 14 13 24 24 H 1.08003 * 120.03244 * 179.72213 * 17 13 12 25 25 H 1.07997 * 119.97010 * 180.22777 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3962 -1.2126 6 1 1.8907 2.3965 1.2124 7 6 2.0096 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0010 9 16 1.1286 -2.7283 0.0005 10 6 2.4723 -3.8573 0.1561 11 6 2.9704 -4.1765 1.4183 12 6 4.0154 -5.0550 1.5420 13 6 4.5821 -5.6308 0.4004 14 6 5.7071 -6.5761 0.5307 15 7 6.2527 -7.1299 -0.5702 16 8 6.1421 -6.8556 1.6313 17 6 4.0844 -5.3045 -0.8651 18 6 3.0361 -4.4291 -0.9832 19 1 -0.4850 0.8400 -0.0004 20 1 2.5326 -3.7312 2.2995 21 1 4.4012 -5.3017 2.5201 22 1 5.9055 -6.9073 -1.4481 23 1 6.9951 -7.7485 -0.4848 24 1 4.5233 -5.7444 -1.7485 25 1 2.6490 -4.1796 -1.9601 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306280102.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = -23.668783 kcal Electronic energy + Delta-G solvation = -12109.747058 eV Core-core repulsion = 9792.861135 eV Total energy + Delta-G solvation = -2316.885923 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.82242 -37.73610 -33.83995 -32.57950 -30.68125 -30.50504 -25.65706 -23.92315 -22.18006 -20.47319 -18.26320 -17.83039 -16.75807 -15.99132 -14.91065 -14.84835 -14.65659 -14.28486 -13.69695 -13.25278 -13.03176 -12.38327 -12.07169 -11.19476 -11.16023 -10.83257 -10.78081 -10.12115 -9.88188 -9.76584 -9.22947 -9.04505 -8.68454 -8.05839 -6.78835 -6.35221 -4.09550 1.01411 1.78774 2.96143 3.15208 3.18251 3.24593 3.39558 3.54018 4.05180 4.22883 4.95501 5.00568 5.05312 5.26292 5.40532 5.78446 5.84278 5.98891 6.35269 6.50556 6.56965 6.73600 6.92132 7.18725 7.30940 7.51632 8.24917 8.26611 9.10577 10.71517 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.046940 B = 0.006483 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.363386 B = 4317.806818 C = 4475.461394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.077 0.923 9 S -0.039 6.039 10 C -0.066 4.066 11 C -0.094 4.094 12 C -0.067 4.067 13 C -0.153 4.153 14 C 0.568 3.432 15 N -0.855 5.855 16 O -0.549 6.549 17 C -0.096 4.096 18 C -0.095 4.095 19 H 0.270 0.730 20 H 0.134 0.866 21 H 0.130 0.870 22 H 0.401 0.599 23 H 0.401 0.599 24 H 0.120 0.880 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -9.385 -3.129 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.667 4.667 8 H 0.095 0.905 9 S 0.195 5.805 10 C -0.177 4.177 11 C -0.115 4.115 12 C -0.088 4.088 13 C -0.157 4.157 14 C 0.355 3.645 15 N -0.419 5.419 16 O -0.427 6.427 17 C -0.116 4.116 18 C -0.115 4.115 19 H 0.080 0.920 20 H 0.152 0.848 21 H 0.148 0.852 22 H 0.231 0.769 23 H 0.231 0.769 24 H 0.138 0.862 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.556 -9.486 -2.439 11.786 hybrid contribution 1.994 1.060 -0.362 2.287 sum 8.550 -8.426 -2.801 12.327 Atomic orbital electron populations 1.69963 1.05961 1.27683 1.46774 1.25022 0.95130 0.99160 0.94257 0.86048 0.79739 0.81406 0.78008 1.19445 1.20432 1.20414 1.22884 0.94906 0.89886 1.59064 0.90452 1.83592 1.04382 0.97379 1.95151 1.23220 1.00810 0.99408 0.94292 1.21658 0.95564 0.96416 0.97844 1.21132 0.94866 0.94818 0.97955 1.19796 0.99102 1.01965 0.94838 1.18347 0.82286 0.79852 0.83985 1.43766 1.38833 1.49828 1.09426 1.90792 1.63238 1.62525 1.26162 1.21087 0.96984 0.98015 0.95540 1.21529 0.95024 0.96012 0.98980 0.92023 0.84816 0.85170 0.76935 0.76863 0.86240 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.79 13.22 55.49 0.73 -24.06 15 2 C 0.07 2.01 5.49 -17.45 -0.10 1.91 15 3 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -14.27 9.47 30.95 0.29 -13.98 15 8 H 0.08 2.11 7.79 -52.49 -0.41 1.70 15 9 S -0.04 -0.99 21.41 -107.50 -2.30 -3.29 15 10 C -0.07 -1.37 5.47 -38.72 -0.21 -1.58 15 11 C -0.09 -1.78 9.76 -39.57 -0.39 -2.17 15 12 C -0.07 -1.15 9.56 -39.40 -0.38 -1.53 15 13 C -0.15 -2.41 5.88 -104.91 -0.62 -3.03 15 14 C 0.57 8.34 8.03 -12.48 -0.10 8.24 15 15 N -0.85 -8.27 8.82 30.46 0.27 -8.00 15 16 O -0.55 -9.96 17.17 5.27 0.09 -9.87 15 17 C -0.10 -1.38 9.51 -39.40 -0.37 -1.75 15 18 C -0.09 -1.66 9.76 -39.57 -0.39 -2.04 15 19 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 20 H 0.13 2.49 8.06 -52.48 -0.42 2.06 15 21 H 0.13 2.10 7.64 -52.49 -0.40 1.70 15 22 H 0.40 2.84 6.85 -40.82 -0.28 2.56 15 23 H 0.40 3.14 8.93 -40.82 -0.36 2.77 15 24 H 0.12 1.21 6.39 -52.48 -0.34 0.87 15 25 H 0.13 2.19 8.06 -52.49 -0.42 1.76 15 LS Contribution 246.45 15.07 3.71 3.71 Total: -1.00 -31.99 246.45 -6.54 -38.53 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -1.77 Total: 3.02 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.26 Total: -15.93 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 1.00 Total: -32.06 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.30 Total: -3.29 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.99 -6.54 -38.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306280102.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.865 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds